Rh2AG212200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015766
Physical Location & Seq
Forward (+)
21599328 .. 21599618
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG212200.1

Sequence Viewer

Length: 291 bp
ATGTTCTTGTTTGACTTTCGAACCCACCTCCACTTCTCTCCGGAGCTTATCGATCTTGTTGTGGCACTGCGCGACGGTCTTGAACAACGAGACCAGTGGGAATTGGGCGGCGAGGGTGGTAGCGACGTCATCCCAGTTGGTGGCTTTGAGATTGGTGTGGCCGAGAGAGGACCACTTGTCCTTGAAGATAGAGATGAGGGCTTCAGCCTCGTTGTCGGTCCAGCAGCGCGGCGGGGGGTTGGGGAGGACATTGGGGTGGGGGATAAGAAGAGAACGGAGGGCGTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.36

Weight (kDa)

4.51

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 140
AccII CGCG 2 cut(s) 72, 229
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 3 cut(s) 108, 229, 232
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 83, 185
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 72, 229
AspS9I GGNCC 2 cut(s) 170, 218
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 170, 218
BbvI GCAGC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 3 cut(s) 109, 225, 230
BlsI GCNGC 3 cut(s) 110, 226, 231
Bme18I GGWCC 2 cut(s) 170, 218
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 170, 218
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 94, 134
BseAI TCCGGA 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 51
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 94, 134
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 72, 229
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 51
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 3 cut(s) 108, 229, 232
BspANI GGCC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 2 cut(s) 72, 229
BspT104I TTCGAA 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 94, 134
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 19
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 72, 229
BstHHI GCGC 2 cut(s) 72, 229
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 52
BstUI CGCG 2 cut(s) 72, 229
BstV1I GCAGC 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 101
CfoI GCGC 2 cut(s) 72, 229
Cfr13I GGNCC 2 cut(s) 170, 218
ClaI ATCGAT 1 cut(s) 51
CviJI RGCY 5 cut(s) 46, 144, 161, 201, 207
CviKI_1 RGCY 5 cut(s) 46, 144, 161, 201, 207
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 170, 218
Eco57I CTGAAG 1 cut(s) 187
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 109, 225, 230
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 109, 225, 230
GlaI GCGC 2 cut(s) 71, 228
GluI GCNGC 3 cut(s) 109, 225, 230
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 72, 229
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 2 cut(s) 70, 227
HinP1I GCGC 2 cut(s) 70, 227
HpaII CCGG 1 cut(s) 41
Hpy188III TCNNGA 2 cut(s) 41, 80
Hpy99I CGWCG 2 cut(s) 77, 128
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 2 cut(s) 70, 227
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 54, 107, 147, 234
Lsp1109I GCAGC 1 cut(s) 236
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 197, 280
MluCI AATT 1 cut(s) 101
MnlI CCTC 7 cut(s) 38, 106, 161, 190, 218, 238, 271
MroI TCCGGA 1 cut(s) 40
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 41
MvnI CGCG 2 cut(s) 72, 229
NdeII GATC 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 187
NspV TTCGAA 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 3 cut(s) 110, 226, 231
PspPI GGNCC 2 cut(s) 170, 218
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 3 cut(s) 109, 225, 230
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 170, 218
SetI ASST 4 cut(s) 30, 48, 129, 289
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 2 cut(s) 170, 218
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 101
SsiI CCGC 3 cut(s) 108, 229, 232
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 19, 51
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 101
TauI GCSGC 2 cut(s) 111, 232
TscAI CASTG 2 cut(s) 72, 101
TseI GCWGC 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 72, 101
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 170, 218
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.