Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016457

Physical Location & Seq

Genomic Coordinates Forward (+)

46340523 .. 46340840

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCCACGGCGCCGGAATCCGCCATCGAGATCGTCAACACGTGGCTTAACACTCCCTTCAAAGCAGCATGTCCTGCGTCAAAGTCGAAACCTTGGCCGGAAATTGGAGCTGATTCTGATTTGAAGGAGAGCTCTTGTTCCATCTGCTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTTCGGGTCGTTCAATGAAGATATTGAGTTCTTTATCAAGTGGGATGAGAAATGGGATATGTTCTTTGATGAAGATCTCGAGGCTGCGAACAAGGCTATTGATCAAGAAATTGGAGAATGGGGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

106

Amino Acids

11.42

Weight (kDa)

9.62

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217791
rosa_laevigata	RLG00000003265 RLG00000008669
rosa_multiflora	Rmu_sc0003536.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180330
rosa_samantha	Rh4CG138300 Rh4DG125300 Rh4DG277500 Rh7AG324300 Rh7BG105600 Rh7BG315400 Rh7CG051300 Rh7CG330800 Rh7CG341200
rosa_wichuraiana	Rw4G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	166
AcvI	CACGTG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	61, 124, 172, 201
AluBI	AGCT	2 cut(s)	110, 132
AluI	AGCT	2 cut(s)	110, 132
Alw21I	GWGCWC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	65, 271
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	77, 258
BccI	CCATC	2 cut(s)	32, 149
BceAI	ACGGC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	14
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	66, 272
BlsI	GCNGC	2 cut(s)	67, 273
BmeT110I	CYCGRG	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	6, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	6, 92
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	77, 258
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	14, 98
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	30, 261, 288
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	6, 92
BssMI	GATC	3 cut(s)	30, 261, 288
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	33, 264, 291
BstMBI	GATC	3 cut(s)	30, 261, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 280
BstNSI	RCATGY	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	77, 258
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	1 cut(s)	66
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	6 cut(s)	46, 97, 110, 132, 271, 283
CviKI_1	RGCY	6 cut(s)	46, 97, 110, 132, 271, 283
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	3 cut(s)	32, 263, 290
DpnII	GATC	3 cut(s)	30, 261, 288
EaeI	YGGCCR	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	72
FaiI	YATR	3 cut(s)	70, 185, 247
FatI	CATG	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	66, 272
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	66, 272
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	66, 272
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	14, 98
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	4 cut(s)	17, 113, 160, 172
HpaII	CCGG	2 cut(s)	14, 98
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	6, 37
Hpy188I	TCNGA	3 cut(s)	118, 165, 177
Hpy188III	TCNNGA	3 cut(s)	28, 265, 292
Hpy8I	GTNNAC	2 cut(s)	6, 37
HpyAV	CCTTC	2 cut(s)	67, 118
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 280
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	30, 261, 288
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	3 cut(s)	27, 87, 111
Lsp1109I	GCAGC	2 cut(s)	77, 258
MaeII	ACGT	1 cut(s)	41
MalI	GATC	3 cut(s)	32, 263, 290
MboI	GATC	3 cut(s)	30, 261, 288
MboII	GAAGA	3 cut(s)	169, 217, 271
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	4 cut(s)	102, 166, 186, 296
Mly113I	GGCGCC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	48
MspI	CCGG	2 cut(s)	14, 98
MwoI	GCNNNNNNNGC	2 cut(s)	74, 280
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	3 cut(s)	30, 261, 288
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	72
PaeR7I	CTCGAG	1 cut(s)	265
PfeI	GAWTC	4 cut(s)	17, 113, 160, 172
PkrI	GCNGC	2 cut(s)	67, 273
PluTI	GGCGCC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	42
PmlI	CACGTG	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	134
PspCI	CACGTG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	66, 272
Sau3AI	GATC	3 cut(s)	30, 261, 288
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	4 cut(s)	44, 94, 112, 134
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	4 cut(s)	102, 166, 186, 296
SsiI	CCGC	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	10
SstI	GAGCTC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	27, 86, 266
TasI	AATT	4 cut(s)	102, 166, 186, 296
TfiI	GAWTC	4 cut(s)	17, 113, 160, 172
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	2 cut(s)	65, 271
TspDTI	ATGAA	2 cut(s)	218, 272
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.