Rroxscaffold_7G00180330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016457
Physical Location & Seq
Forward (+)
19769023 .. 19771099
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180330.1

Sequence Viewer

Length: 465 bp
ATGATTCCGGAGCCTGGAGGTCAAATCGATCTGGAACGGGAAGTTGATGTGGTGCATTGGACTAAATTAAGAGACAATGGGATAGCAATTTTTGCAAAAATGGGTCTCATCTGTGGCTCGTTAGCTTTGGTGGTCGGGGAGGTTTTGCAGGGGTTGGTCGGCTCTGTCGATCTTACTAGCGGTGAAGGCAGTTGCTACACAGGTTCTTGGAGAGTCGGTGGTTCCTTGATGATGGCAGCATCCTGTACCGCGGCTTGGTGCGTTGGTGACTCGAACCCAACCCTTAGTGGTGCTTTAGTGGTGGCGTTGATAAGGATGATGGCGGCTCTGGAAAGGCAACGAAGGTGGTCGAGTCGATGTCAGGTCGTGTTGTTGGTGGTGGATTGGAGTTGGGCTGGGTCAGCTTTGCTGGAGCCGTTTTGGGCCATGTTAGGCAGTTTTTATTTTGTTAGTCTTTCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.53

Weight (kDa)

5.02

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 4 cut(s) 180, 249, 251, 323
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 14, 255
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 125, 404
AluI AGCT 2 cut(s) 125, 404
Alw26I GTCTC 2 cut(s) 66, 110
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 194, 278
BbvI GCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 226, 313
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 66, 110
BfaI CTAG 2 cut(s) 177, 463
BisI GCNGC 3 cut(s) 237, 252, 324
BlsI GCNGC 3 cut(s) 238, 253, 325
Bme1390I CCNGG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 3 cut(s) 12, 223, 414
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 2 cut(s) 36, 431
Bsa29I ATCGAT 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 255
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 239, 321
BseLI CCNNNNNNNGG 2 cut(s) 14, 255
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 14, 255
BsmAI GTCTC 2 cut(s) 66, 110
BsnI GGCC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 2 cut(s) 28, 169
BspACI CCGC 4 cut(s) 180, 249, 251, 323
BspANI GGCC 1 cut(s) 425
BspDI ATCGAT 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 3 cut(s) 12, 223, 414
BspTNI GGTCTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 28, 169
Bst2UI CCWGG 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 239, 321
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 2 cut(s) 31, 172
BstMAI GTCTC 2 cut(s) 66, 110
BstMBI GATC 2 cut(s) 28, 169
BstMWI GCNNNNNNNGC 3 cut(s) 92, 186, 401
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 425
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 239, 321
Cfr13I GGNCC 1 cut(s) 423
Cfr42I CCGCGG 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 326, 361
CviAII CATG 1 cut(s) 427
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 30, 171
DpnII GATC 2 cut(s) 28, 169
Eco31I GGTCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 430
FaiI YATR 1 cut(s) 428
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 237, 252, 324
FokI GGATG 2 cut(s) 226, 328
Fsp4HI GCNGC 3 cut(s) 237, 252, 324
FspBI CTAG 2 cut(s) 177, 463
GluI GCNGC 3 cut(s) 237, 252, 324
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 36, 431
HaeIII GGCC 1 cut(s) 425
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 430
HinfI GANTC 4 cut(s) 4, 213, 269, 352
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 194, 278
Hpy188III TCNNGA 3 cut(s) 8, 32, 329
HpyAV CCTTC 2 cut(s) 179, 336
HpyCH4V TGCA 3 cut(s) 55, 95, 148
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 186, 401
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 7
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 2 cut(s) 28, 169
LmnI GCTCC 2 cut(s) 10, 412
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 177, 463
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 30, 171
MboI GATC 2 cut(s) 28, 169
MluCI AATT 2 cut(s) 65, 87
MlyI GAGTC 3 cut(s) 222, 263, 361
MnlI CCTC 2 cut(s) 11, 133
MroI TCCGGA 1 cut(s) 7
MseI TTAA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 92, 186, 401
NdeII GATC 2 cut(s) 28, 169
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 3 cut(s) 12, 223, 414
NmuCI GTSAC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 238, 253, 325
PleI GAGTC 3 cut(s) 221, 263, 360
PpsI GAGTC 3 cut(s) 221, 263, 360
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 12, 223, 414
PspPI GGNCC 1 cut(s) 423
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 237, 252, 324
Sau3AI GATC 2 cut(s) 28, 169
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 3 cut(s) 222, 263, 361
ScrFI CCNGG 1 cut(s) 15
SetI ASST 7 cut(s) 22, 127, 144, 205, 347, 366, 406
SfaNI GCATC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 252
SgrBI CCGCGG 1 cut(s) 252
Sse9I AATT 2 cut(s) 65, 87
SsiI CCGC 4 cut(s) 180, 249, 251, 323
SspMI CTAG 2 cut(s) 177, 463
StyD4I CCNGG 1 cut(s) 13
TaqI TCGA 5 cut(s) 27, 168, 272, 350, 355
TasI AATT 2 cut(s) 65, 87
TauI GCSGC 2 cut(s) 254, 326
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 266
XspI CTAG 2 cut(s) 177, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.