Rh4DG125300

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016457
Physical Location & Seq
Forward (+)
20343630 .. 20344124
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG125300.1

Sequence Viewer

Length: 495 bp
ATGAACTCAACCAAAATTCACATCCCAGAAATTAAAAATCAAAATCAAATCCCAGCAGTGGCTCGCTCAACATCGACGTCGAGGACCTCGGCACTTCCTCTTACTACTCCATCGCCGTTGCATCTCCTCCTCGCCGCCAACACCAAAACTCGTGGACTTTTCGCTTGCAGCACCGGCATCGGAGTCGTGACCTTAGCCAACAAGTTCCCAGAAATCTTCGCGCCCGCGTGTCTCTCCCTGTCCAAAGCCCTTAACGCCCAGCTCCAACGTCCTCCTGTCTCCGGCATGTCCACGACGCCGAAATCCGCCATCGAGATCGTCGACACGTGGCTCAACATTCCCTTCAAAGTGCCCTGTCCTACGTTGAAGTCGAAACCTTGGCCGAAAATTGGAGCTGATTTTGATTTGAAGGAGAGCTCTTGTTCCATCTGTTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTTCGGGTCATTCAATGAATTAA

Protein Analysis

164

Amino Acids

17.62

Weight (kDa)

9.57

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 44 - 116 1.8e-07 Ribose/Galactose Isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 221, 227
AciI CCGC 3 cut(s) 135, 225, 306
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 15, 451
AcvI CACGTG 1 cut(s) 327
AcyI GRCGYC 2 cut(s) 77, 296
AfiI CCNNNNNNNGG 3 cut(s) 58, 281, 389
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 5 cut(s) 346, 367, 409, 457, 486
AluBI AGCT 3 cut(s) 262, 395, 417
AluI AGCT 3 cut(s) 262, 395, 417
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 2 cut(s) 236, 283
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 15, 451
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 419
BauI CACGAG 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 180
BccI CCATC 3 cut(s) 118, 317, 434
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 4 cut(s) 160, 166, 194, 200
BcoDI GTCTC 2 cut(s) 236, 283
BisI GCNGC 2 cut(s) 135, 169
BlsI GCNGC 2 cut(s) 136, 170
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 130, 186
Bpu10I CCTNAGC 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 2 cut(s) 77, 296
BsaJI CCNNGG 2 cut(s) 87, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 281, 389
Bse118I RCCGGY 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 87, 377
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BseRI GAGGAG 2 cut(s) 116, 119
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 2 cut(s) 52, 258
Bsh1236I CGCG 2 cut(s) 221, 227
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 174, 282
BslI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BsmAI GTCTC 2 cut(s) 236, 283
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 354, 419
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 3 cut(s) 135, 225, 306
BspANI GGCC 1 cut(s) 382
BspFNI CGCG 2 cut(s) 221, 227
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 87, 377
BssMI GATC 1 cut(s) 315
BssNI GRCGYC 2 cut(s) 77, 296
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 150
BstACI GRCGYC 2 cut(s) 77, 296
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 64, 166, 225
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 2 cut(s) 221, 227
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 2 cut(s) 236, 283
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 174, 254
BstNSI RCATGY 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 2 cut(s) 221, 227
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 64, 166, 225
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 1 cut(s) 304
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 1 cut(s) 286
CviJI RGCY 8 cut(s) 62, 197, 248, 262, 331, 382, 395, 417
CviKI_1 RGCY 8 cut(s) 62, 197, 248, 262, 331, 382, 395, 417
DdeI CTNAG 1 cut(s) 193
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 380
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 287, 470
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 232
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 135, 169
FokI GGATG 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 135, 169
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 135, 169
GsaI CCCAGC 2 cut(s) 56, 262
HaeIII GGCC 1 cut(s) 382
HapII CCGG 2 cut(s) 174, 282
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 2 cut(s) 77, 296
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 3 cut(s) 183, 445, 457
HpaII CCGG 2 cut(s) 174, 282
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 3 cut(s) 155, 291, 322
Hpy188I TCNGA 3 cut(s) 182, 450, 462
Hpy188III TCNNGA 2 cut(s) 187, 313
Hpy8I GTNNAC 3 cut(s) 155, 291, 322
Hpy99I CGWCG 4 cut(s) 79, 82, 298, 323
HpyAV CCTTC 2 cut(s) 352, 403
HpyCH4IV ACGT 4 cut(s) 77, 268, 326, 362
HpyCH4V TGCA 2 cut(s) 121, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 254
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 4 cut(s) 77, 268, 326, 362
Hsp92I GRCGYC 2 cut(s) 77, 296
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 267, 392
LpnPI CCDG 9 cut(s) 39, 66, 187, 222, 251, 272, 288, 295, 367
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 130, 186
MaeII ACGT 4 cut(s) 77, 268, 326, 362
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 208, 454
MhlI GDGCHC 2 cut(s) 354, 419
MluCI AATT 6 cut(s) 15, 30, 387, 451, 471, 490
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 6 cut(s) 75, 97, 108, 137, 140, 282
MseI TTAA 3 cut(s) 33, 252, 493
MspI CCGG 2 cut(s) 174, 282
MvnI CGCG 2 cut(s) 221, 227
MwoI GCNNNNNNNGC 2 cut(s) 174, 254
NdeII GATC 1 cut(s) 315
NlaIII CATG 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 368
PfeI GAWTC 2 cut(s) 445, 457
PkrI GCNGC 2 cut(s) 136, 170
PleI GAGTC 1 cut(s) 191
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 327
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 84
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 52, 258
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 1 cut(s) 320
SaqAI TTAA 3 cut(s) 33, 252, 493
SatI GCNGC 2 cut(s) 135, 169
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 2 cut(s) 354, 419
SfaNI GCATC 2 cut(s) 130, 186
SinI GGWCC 1 cut(s) 84
Sse9I AATT 6 cut(s) 15, 30, 387, 451, 471, 490
SsiI CCGC 3 cut(s) 135, 225, 306
SstI GAGCTC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 377
TaiI ACGT 4 cut(s) 80, 271, 329, 365
TaqI TCGA 5 cut(s) 74, 80, 312, 321, 371
TasI AATT 6 cut(s) 15, 30, 387, 451, 471, 490
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 445, 457
Tru1I TTAA 3 cut(s) 33, 252, 493
Tru9I TTAA 3 cut(s) 33, 252, 493
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 2 cut(s) 15, 451
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 321
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.