Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016457

Physical Location & Seq

Genomic Coordinates Forward (+)

36497837 .. 36498546

Gene Structure 710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCCACGGCGCCGGAATCCGCCATCGAGATCGTCGACACGTGGCTTAACACTCCCTTCAAAGTGCCCTGTCCTGCGTTGAAGTCGAAACCTTGGCCGGAAATTGGAGCTGATTCTGATTTGAAGGAGAGCTCTTGTTCCATCTGCTGTTTGGTGAAGAATCAGAATTTGAATACGATTGATATAATTTCGGGTCATTCAATGAAGATACTGAGTTCTTTATCAAGTGGGATGGGAAACGGGATATGTTATTTGATGAAGATCTCAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

6.52

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217791
rosa_laevigata	RLG00000003265 RLG00000008669
rosa_multiflora	Rmu_sc0003536.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180330
rosa_samantha	Rh4CG138300 Rh4DG125300 Rh4DG277500 Rh7AG324300 Rh7BG105600 Rh7BG315400 Rh7CG051300 Rh7CG330800 Rh7CG341200
rosa_wichuraiana	Rw4G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	166
AcvI	CACGTG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	61, 82, 124, 172, 201
AluBI	AGCT	2 cut(s)	110, 132
AluI	AGCT	2 cut(s)	110, 132
Alw21I	GWGCWC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	134
BccI	CCATC	3 cut(s)	32, 149, 226
BceAI	ACGGC	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	14
BglII	AGATCT	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	6, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	6, 92
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	14, 98
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	69, 134
Bsp143I	GATC	2 cut(s)	30, 261
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	6, 92
BssMI	GATC	2 cut(s)	30, 261
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	33, 264
BstMBI	GATC	2 cut(s)	30, 261
BstSLI	GKGCMC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	13
CviJI	RGCY	5 cut(s)	46, 97, 110, 132, 271
CviKI_1	RGCY	5 cut(s)	46, 97, 110, 132, 271
DdeI	CTNAG	1 cut(s)	212
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	2 cut(s)	32, 263
DpnII	GATC	2 cut(s)	30, 261
EaeI	YGGCCR	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	92
FaiI	YATR	2 cut(s)	185, 247
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	14, 98
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	3 cut(s)	17, 113, 160
HpaII	CCGG	2 cut(s)	14, 98
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	6, 37
Hpy188I	TCNGA	2 cut(s)	118, 165
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 37
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	67, 118
HpyCH4IV	ACGT	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	30, 261
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	27, 82, 87, 111
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	32, 263
MboI	GATC	2 cut(s)	30, 261
MboII	GAAGA	3 cut(s)	169, 217, 271
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	69, 134
MluCI	AATT	3 cut(s)	102, 166, 186
Mly113I	GGCGCC	1 cut(s)	11
MseI	TTAA	1 cut(s)	48
MspI	CCGG	2 cut(s)	14, 98
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	2 cut(s)	30, 261
NlaIV	GGNNCC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	17, 113, 160
PluTI	GGCGCC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	42
PmlI	CACGTG	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	134
PspCI	CACGTG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	30, 261
SduI	GDGCHC	2 cut(s)	69, 134
SetI	ASST	4 cut(s)	44, 94, 112, 134
SfoI	GGCGCC	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	3 cut(s)	102, 166, 186
SsiI	CCGC	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	10
SstI	GAGCTC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	27, 36, 86
TasI	AATT	3 cut(s)	102, 166, 186
TfiI	GAWTC	3 cut(s)	17, 113, 160
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	218, 272
XapI	RAATTY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.