Rh7BG315400

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016457
Physical Location & Seq
Reverse (-)
30458502 .. 30459421
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG315400.1

Sequence Viewer

Length: 603 bp
ATGAACTCAACCAAAATTCACATCCCAGAAATTAAAAATCAAAATCAAATCCCAGCAGTGGCTCGCTCAACATCGACGTCGAGGACCTCGGTACTTCCTCCTACTACTCCATCGCCGCCGCGTCTCCTCCTCGCCGCCAACACCAAAACTCGCGGACTTATCGCCTGCAGCACCGACGTCGACGTCGCGACCTTCGCCAACAAGTTCCCCGGAGTCTTCACAACCTCGTGTCTCTCCCCGTCCAACGCCCTCAACGCCCAGCTCCAATGTCCTCCCGTCTCCGGCATGTCCACGGCGCTGGAATCCGCCATCGAGATCGTCGACACGTGGCTCAACACTCCCTTCAAAGCGCCCTGTCCTGCGTCGAAGTCGAAACCTTGGCCAGAAATTGGAGCTGATTCTGATTTGAATGAGAGCTCTTGCTCCATCTGCTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTTCGGGTCGTTCAATGAAGATATTGAGTTCTTTATCAAGTGGGATGGGAAATTGGATATGTTCTTTGATGAAGATCTCAAGGCTGCGAACAAGGCTATTGATCAAGAAATTGGAGAATGGGGGTAAGTGA

Protein Analysis

200

Amino Acids

21.43

Weight (kDa)

9.47

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 45 - 116 9.9e-06 Ribose/Galactose Isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 3 cut(s) 80, 180, 186
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 2 cut(s) 180, 321
AccII CGCG 3 cut(s) 121, 153, 188
AciI CCGC 5 cut(s) 116, 119, 135, 153, 306
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 15, 451
AcvI CACGTG 1 cut(s) 327
AcyI GRCGYC 3 cut(s) 77, 177, 183
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 3 cut(s) 58, 281, 389
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 4 cut(s) 346, 409, 457, 486
AluBI AGCT 3 cut(s) 262, 395, 417
AluI AGCT 3 cut(s) 262, 395, 417
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 3 cut(s) 128, 236, 283
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 168, 556
ApoI RAATTY 2 cut(s) 15, 451
AspLEI GCGC 2 cut(s) 298, 352
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 382
BanII GRGCYC 1 cut(s) 419
BauI CACGAG 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 180, 543
BccI CCATC 4 cut(s) 118, 317, 434, 511
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 128, 236, 283
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 2 cut(s) 299, 353
BglII AGATCT 1 cut(s) 546
BisI GCNGC 5 cut(s) 116, 119, 135, 169, 557
BlsI GCNGC 5 cut(s) 117, 120, 136, 170, 558
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 545
BsaHI GRCGYC 3 cut(s) 77, 177, 183
BsaJI CCNNGG 4 cut(s) 87, 208, 291, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 281, 389
Bse8I GATNNNNATC 1 cut(s) 545
BseDI CCNNGG 4 cut(s) 87, 208, 291, 377
BseGI GGATG 2 cut(s) 21, 522
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BseRI GAGGAG 2 cut(s) 116, 119
BseXI GCAGC 2 cut(s) 180, 543
BseYI CCCAGC 2 cut(s) 52, 258
Bsh1236I CGCG 3 cut(s) 121, 153, 188
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 210, 282
BslI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BsmAI GTCTC 3 cut(s) 128, 236, 283
BsmBI CGTCTC 2 cut(s) 128, 283
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 3 cut(s) 315, 546, 573
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 5 cut(s) 116, 119, 135, 153, 306
BspANI GGCC 1 cut(s) 382
BspFNI CGCG 3 cut(s) 121, 153, 188
BspMAI CTGCAG 1 cut(s) 170
BssECI CCNNGG 4 cut(s) 87, 208, 291, 377
BssMI GATC 3 cut(s) 315, 546, 573
BssNI GRCGYC 3 cut(s) 77, 177, 183
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 226
BstACI GRCGYC 3 cut(s) 77, 177, 183
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 64, 166
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 21, 522
BstFNI CGCG 3 cut(s) 121, 153, 188
BstH2I RGCGCY 2 cut(s) 299, 353
BstHHI GCGC 2 cut(s) 298, 352
BstKTI GATC 3 cut(s) 318, 549, 576
BstMAI GTCTC 3 cut(s) 128, 236, 283
BstMBI GATC 3 cut(s) 315, 546, 573
BstMWI GCNNNNNNNGC 4 cut(s) 194, 254, 429, 565
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 3 cut(s) 121, 153, 188
BstV1I GCAGC 2 cut(s) 180, 543
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 21, 522
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 64, 166
CfoI GCGC 2 cut(s) 298, 352
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 2 cut(s) 110, 351
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 286
CviJI RGCY 8 cut(s) 62, 262, 331, 382, 395, 417, 556, 568
CviKI_1 RGCY 8 cut(s) 62, 262, 331, 382, 395, 417, 556, 568
CviQI GTAC 1 cut(s) 92
DpnI GATC 3 cut(s) 317, 548, 575
DpnII GATC 3 cut(s) 315, 546, 573
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 380
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 2 cut(s) 128, 283
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 287, 470, 532
FatI CATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 2 cut(s) 180, 321
Fnu4HI GCNGC 5 cut(s) 116, 119, 135, 169, 557
FokI GGATG 2 cut(s) 8, 529
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 5 cut(s) 116, 119, 135, 169, 557
GlaI GCGC 2 cut(s) 297, 351
GluI GCNGC 5 cut(s) 116, 119, 135, 169, 557
GsaI CCCAGC 2 cut(s) 56, 262
HaeII RGCGCY 2 cut(s) 299, 353
HaeIII GGCC 1 cut(s) 382
HapII CCGG 2 cut(s) 210, 282
HgaI GACGC 2 cut(s) 110, 351
HhaI GCGC 2 cut(s) 298, 352
Hin1I GRCGYC 3 cut(s) 77, 177, 183
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 2 cut(s) 296, 350
HinP1I GCGC 2 cut(s) 296, 350
HincII GTYRAC 2 cut(s) 181, 322
HindII GTYRAC 2 cut(s) 181, 322
HinfI GANTC 5 cut(s) 213, 302, 398, 445, 457
HpaII CCGG 2 cut(s) 210, 282
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 3 cut(s) 181, 291, 322
Hpy188I TCNGA 3 cut(s) 403, 450, 462
Hpy188III TCNNGA 3 cut(s) 187, 313, 577
Hpy8I GTNNAC 3 cut(s) 181, 291, 322
Hpy99I CGWCG 8 cut(s) 79, 82, 179, 182, 185, 188, 323, 367
HpyAV CCTTC 2 cut(s) 202, 352
HpyCH4IV ACGT 4 cut(s) 77, 177, 183, 326
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 254, 429, 565
HpySE526I ACGT 4 cut(s) 77, 177, 183, 326
Hsp92I GRCGYC 3 cut(s) 77, 177, 183
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 2 cut(s) 296, 350
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 3 cut(s) 315, 546, 573
LmnI GCTCC 3 cut(s) 267, 392, 428
Lsp1109I GCAGC 2 cut(s) 180, 543
MaeII ACGT 4 cut(s) 77, 177, 183, 326
MalI GATC 3 cut(s) 317, 548, 575
MboI GATC 3 cut(s) 315, 546, 573
MboII GAAGA 4 cut(s) 208, 454, 502, 556
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 7 cut(s) 15, 30, 387, 451, 471, 523, 581
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 8 cut(s) 75, 97, 108, 137, 140, 235, 260, 282
Mox20I TGGCCA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 382
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 382
MspI CCGG 2 cut(s) 210, 282
MspR9I CCNGG 1 cut(s) 210
MvnI CGCG 3 cut(s) 121, 153, 188
MwoI GCNNNNNNNGC 4 cut(s) 194, 254, 429, 565
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 315, 546, 573
NlaIII CATG 1 cut(s) 289
NruI TCGCGA 1 cut(s) 188
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 4 cut(s) 302, 398, 445, 457
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 5 cut(s) 117, 120, 136, 170, 558
PleI GAGTC 1 cut(s) 221
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 327
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 84
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 52, 258
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PstI CTGCAG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 546
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 2 cut(s) 179, 320
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 5 cut(s) 116, 119, 135, 169, 557
Sau3AI GATC 3 cut(s) 315, 546, 573
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 166
SgrDI CGTCGACG 1 cut(s) 179
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 7 cut(s) 15, 30, 387, 451, 471, 523, 581
SsiI CCGC 5 cut(s) 116, 119, 135, 153, 306
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 377
TaiI ACGT 4 cut(s) 80, 180, 186, 329
TaqI TCGA 7 cut(s) 74, 80, 180, 312, 321, 365, 371
TasI AATT 7 cut(s) 15, 30, 387, 451, 471, 523, 581
TauI GCSGC 3 cut(s) 118, 121, 137
TfiI GAWTC 4 cut(s) 302, 398, 445, 457
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 168, 556
TspDTI ATGAA 3 cut(s) 17, 503, 557
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 2 cut(s) 15, 451
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 180, 321
ZraI GACGTC 3 cut(s) 78, 178, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.