Rh7CG051300

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016457
Physical Location & Seq
Reverse (-)
3736730 .. 3737257
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG051300.1

Sequence Viewer

Length: 528 bp
ATGGCTAGCTCAACATGGACGTCGAGGACCTTGGCACTTCCTCCTACTACTCCATCGCCCCCGCGTCTCCTCCTCGCCGTCGACACCAATTGCAGCACTGGCGTCGACGTCGTGACCTTCGCCAACAAGTTCCCTGGAGTCTTCACGGCCATGTGTCTCTCCTTGTCTGACGTCCTCAACGCCCAGCTCCAACTTCCTCCCATCTCCGGCATGTCCACGGCGTCGGAATCCGCTATCGAGATTGTCGACACGTGGCTCAACACTCCCTTCAAAGTGCCTCGTCATGCGTCGAAGCCGAAACCTTGGCCAGAAATTGGAGCTGATTCTGATTTGAAGGAGAGCTCTTGTTCCATCTGTTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTTCAAGTCGTTCAATGAAGATATTGAGTTCTTTATCAAGTGGGATGGGAAATGGGATTTGTTCTTTGATGAAGATCTCAAGGCTGCGAACAAGGCTATTGATCAAGAAATTGGAGAATGGGGCTAAGTGA

Protein Analysis

175

Amino Acids

18.82

Weight (kDa)

9.32

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 31 - 98 2.8e-06 Ribose/Galactose Isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 23, 111, 174
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 3 cut(s) 81, 105, 246
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 231
AcoI YGGCCR 2 cut(s) 147, 305
AcsI RAATTY 1 cut(s) 376
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 5 cut(s) 20, 102, 108, 171, 221
AfiI CCNNNNNNNGG 2 cut(s) 206, 314
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 5 cut(s) 271, 334, 382, 402, 411
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 4 cut(s) 9, 187, 320, 342
AluI AGCT 4 cut(s) 9, 187, 320, 342
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 71, 161
AoxI GGCC 2 cut(s) 147, 305
ApeKI GCWGC 2 cut(s) 93, 481
ApoI RAATTY 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 376
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 307
BanII GRGCYC 1 cut(s) 344
BbrPI CACGTG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 105, 468
BccI CCATC 4 cut(s) 61, 209, 359, 436
BceAI ACGGC 3 cut(s) 62, 162, 234
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 71, 161
BfaI CTAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 471
BisI GCNGC 2 cut(s) 94, 482
BlsI GCNGC 2 cut(s) 95, 483
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 470
BsaHI GRCGYC 5 cut(s) 20, 102, 108, 171, 221
BsaJI CCNNGG 4 cut(s) 30, 133, 216, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 314
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 30, 133, 216, 302
BseGI GGATG 1 cut(s) 447
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 206, 314
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 59, 62
BseXI GCAGC 2 cut(s) 105, 468
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 149, 307
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 206, 314
BsmAI GTCTC 2 cut(s) 71, 161
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 149, 307
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 471, 498
BspACI CCGC 2 cut(s) 62, 231
BspANI GGCC 2 cut(s) 149, 307
BspFNI CGCG 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 4 cut(s) 30, 133, 216, 302
BssMI GATC 2 cut(s) 471, 498
BssNI GRCGYC 5 cut(s) 20, 102, 108, 171, 221
BssT1I CCWWGG 2 cut(s) 30, 302
Bst2UI CCWGG 1 cut(s) 135
BstACI GRCGYC 5 cut(s) 20, 102, 108, 171, 221
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 2 cut(s) 474, 501
BstMAI GTCTC 2 cut(s) 71, 161
BstMBI GATC 2 cut(s) 471, 498
BstMWI GCNNNNNNNGC 2 cut(s) 99, 490
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 105, 468
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 2 cut(s) 149, 307
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 4 cut(s) 53, 91, 210, 276
CviAII CATG 4 cut(s) 15, 151, 211, 284
DdeI CTNAG 1 cut(s) 522
DpnI GATC 2 cut(s) 473, 500
DpnII GATC 2 cut(s) 471, 498
EaeI YGGCCR 2 cut(s) 147, 305
Ecl136II GAGCTC 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 30, 302
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 30, 302
EcoT38I GRGCYC 1 cut(s) 344
ErhI CCWWGG 2 cut(s) 30, 302
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 4 cut(s) 18, 154, 214, 287
FaiI YATR 5 cut(s) 16, 152, 212, 285, 395
FatI CATG 4 cut(s) 14, 150, 210, 283
FauI CCCGC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 3 cut(s) 81, 105, 246
Fnu4HI GCNGC 2 cut(s) 94, 482
FokI GGATG 1 cut(s) 454
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 94, 482
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 94, 482
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 149, 307
HapII CCGG 1 cut(s) 207
HgaI GACGC 4 cut(s) 53, 91, 210, 276
Hin1I GRCGYC 5 cut(s) 20, 102, 108, 171, 221
Hin1II CATG 4 cut(s) 18, 154, 214, 287
HincII GTYRAC 3 cut(s) 82, 106, 247
HindII GTYRAC 3 cut(s) 82, 106, 247
HinfI GANTC 5 cut(s) 138, 227, 323, 370, 382
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 4 cut(s) 82, 106, 216, 247
Hpy188I TCNGA 5 cut(s) 169, 226, 328, 375, 387
Hpy188III TCNNGA 3 cut(s) 112, 238, 502
Hpy8I GTNNAC 4 cut(s) 82, 106, 216, 247
Hpy99I CGWCG 7 cut(s) 25, 83, 107, 110, 113, 226, 292
HpyAV CCTTC 3 cut(s) 127, 277, 328
HpyCH4IV ACGT 4 cut(s) 20, 108, 171, 251
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 490
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 4 cut(s) 20, 108, 171, 251
Hsp92I GRCGYC 5 cut(s) 20, 102, 108, 171, 221
Hsp92II CATG 4 cut(s) 18, 154, 214, 287
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 2 cut(s) 471, 498
LmnI GCTCC 2 cut(s) 192, 317
LpnPI CCDG 6 cut(s) 84, 120, 147, 197, 220, 321
Lsp1109I GCAGC 2 cut(s) 105, 468
MaeI CTAG 1 cut(s) 6
MaeII ACGT 4 cut(s) 20, 108, 171, 251
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 473, 500
MboI GATC 2 cut(s) 471, 498
MboII GAAGA 4 cut(s) 133, 379, 427, 481
MfeI CAATTG 1 cut(s) 88
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 344
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 5 cut(s) 88, 312, 376, 396, 506
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 2 cut(s) 204, 214
MnlI CCTC 7 cut(s) 18, 51, 80, 83, 185, 207, 288
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 307
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 99, 490
NdeII GATC 2 cut(s) 471, 498
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 18, 154, 214, 287
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 4 cut(s) 227, 323, 370, 382
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 2 cut(s) 95, 483
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 133
PspCI CACGTG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 133
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
PsuI RGATCY 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 344
SalI GTCGAC 3 cut(s) 80, 104, 245
SatI GCNGC 2 cut(s) 94, 482
Sau3AI GATC 2 cut(s) 471, 498
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 344
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 5 cut(s) 88, 312, 376, 396, 506
SsiI CCGC 2 cut(s) 62, 231
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 2 cut(s) 30, 302
TaiI ACGT 4 cut(s) 23, 111, 174, 254
TaqI TCGA 6 cut(s) 23, 81, 105, 237, 246, 290
TasI AATT 5 cut(s) 88, 312, 376, 396, 506
TfiI GAWTC 4 cut(s) 227, 323, 370, 382
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 93, 481
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 428, 482
TspRI CASTG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 376
XceI RCATGY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XmiI GTMKAC 3 cut(s) 81, 105, 246
XspI CTAG 1 cut(s) 6
ZraI GACGTC 3 cut(s) 21, 109, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.