Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016457

Physical Location & Seq

Genomic Coordinates Reverse (-)

49794422 .. 49795777

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGGCTCTGTACTGGCGTCGAAGGTGGTTGAGCCGATCTCAGGTCATGTTGCTAGTGGTGGGTTGGATTTGGGCCAAGTCACCTTTGCTGGATCTGCCTTGGGCTGGTTTTCTCTTTTGGGCCATCACCGACGTCAACGTCGAGACCTTAGCCGACAAGTTCCTCGAAGTCTTCATGGCCACGTGTCTCTCCCGGTCCGTCGCCCTCAACGCCCAGCTCCAATGTCCTCCTGTCTCCAGCATGTCCACGGCGCCGGAGTCCGCCATCGAGATCGTCGACACGTGGCTCAACACTCCCTTCAAAGTCCATATCCTGCGTCAAAGTCGAAACCTTGGTCGGAAATTAGAGTTGATTCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

9.23

Isoelectric Point (pI)

72.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217791
rosa_laevigata	RLG00000003265 RLG00000008669
rosa_multiflora	Rmu_sc0003536.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180330
rosa_samantha	Rh4CG138300 Rh4DG125300 Rh4DG277500 Rh7AG324300 Rh7BG105600 Rh7BG315400 Rh7CG051300 Rh7CG330800 Rh7CG341200
rosa_wichuraiana	Rw4G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	5, 264
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	180
AcvI	CACGTG	2 cut(s)	186, 285
AcyI	GRCGYC	3 cut(s)	19, 135, 254
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	43, 107
AflIII	ACRYGT	2 cut(s)	185, 282
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	3 cut(s)	140, 194, 241
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	3 cut(s)	75, 123, 180
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	75, 123, 198
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	75, 121
AvaII	GGWCC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	253
BbrPI	CACGTG	2 cut(s)	186, 285
BbsI	GAAGAC	1 cut(s)	166
BccI	CCATC	2 cut(s)	134, 275
BceAI	ACGGC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	140, 194, 241
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	75, 123, 198
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	196
BsaAI	YACGTR	2 cut(s)	186, 285
BsaHI	GRCGYC	3 cut(s)	19, 135, 254
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	101, 249, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 107
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	101, 249, 334
BseLI	CCNNNNNNNGG	2 cut(s)	43, 107
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	3 cut(s)	77, 125, 182
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	196, 257
BslI	CCNNNNNNNGG	2 cut(s)	43, 107
BsmAI	GTCTC	3 cut(s)	140, 194, 241
BsnI	GGCC	3 cut(s)	77, 125, 182
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	38, 94, 273
BspACI	CCGC	2 cut(s)	5, 264
BspANI	GGCC	3 cut(s)	77, 125, 182
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	101, 249, 334
BssMI	GATC	3 cut(s)	38, 94, 273
BssNI	GRCGYC	3 cut(s)	19, 135, 254
BssT1I	CCWWGG	2 cut(s)	101, 334
BstACI	GRCGYC	3 cut(s)	19, 135, 254
BstBAI	YACGTR	2 cut(s)	186, 285
BstDEI	CTNAG	2 cut(s)	42, 151
BstDSI	CCRYGG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	41, 97, 276
BstMAI	GTCTC	3 cut(s)	140, 194, 241
BstMBI	GATC	3 cut(s)	38, 94, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 212
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	77, 125, 182
BtgI	CCRYGG	1 cut(s)	249
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	75, 123, 198
CpoI	CGGWCCG	1 cut(s)	198
CseI	GACGC	2 cut(s)	8, 308
Csp6I	GTAC	1 cut(s)	13
CspI	CGGWCCG	1 cut(s)	198
CviAII	CATG	3 cut(s)	49, 178, 244
CviJI	RGCY	9 cut(s)	8, 36, 77, 107, 125, 155, 182, 220, 289
CviKI_1	RGCY	9 cut(s)	8, 36, 77, 107, 125, 155, 182, 220, 289
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	42, 151
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	3 cut(s)	40, 96, 275
DpnII	GATC	3 cut(s)	38, 94, 273
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	101, 334
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	198
Eco72I	CACGTG	2 cut(s)	186, 285
EcoT14I	CCWWGG	2 cut(s)	101, 334
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	101, 334
FaeI	CATG	3 cut(s)	52, 181, 247
FaiI	YATR	4 cut(s)	50, 179, 245, 312
FatI	CATG	3 cut(s)	48, 177, 243
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	77, 125, 182
HapII	CCGG	2 cut(s)	196, 257
HgaI	GACGC	2 cut(s)	8, 308
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	3 cut(s)	19, 135, 254
Hin1II	CATG	3 cut(s)	52, 181, 247
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	2 cut(s)	139, 280
HindII	GTYRAC	2 cut(s)	139, 280
HinfI	GANTC	2 cut(s)	260, 355
HpaII	CCGG	2 cut(s)	196, 257
HphI	GGTGA	2 cut(s)	75, 121
Hpy166II	GTNNAC	3 cut(s)	139, 249, 280
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	145, 271
Hpy8I	GTNNAC	3 cut(s)	139, 249, 280
Hpy99I	CGWCG	5 cut(s)	24, 137, 146, 206, 281
HpyAV	CCTTC	2 cut(s)	18, 310
HpyCH4IV	ACGT	4 cut(s)	135, 141, 185, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 212
HpyF3I	CTNAG	2 cut(s)	42, 151
HpySE526I	ACGT	4 cut(s)	135, 141, 185, 284
Hsp92I	GRCGYC	3 cut(s)	19, 135, 254
Hsp92II	CATG	3 cut(s)	52, 181, 247
HspAI	GCGC	1 cut(s)	254
KasI	GGCGCC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	38, 94, 273
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	9 cut(s)	29, 77, 93, 209, 230, 246, 253, 270, 329
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	4 cut(s)	135, 141, 185, 284
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	3 cut(s)	40, 96, 275
MboI	GATC	3 cut(s)	38, 94, 273
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	344, 360
MluNI	TGGCCA	1 cut(s)	182
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	2 cut(s)	47, 320
MnlI	CCTC	3 cut(s)	176, 218, 240
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	2 cut(s)	196, 257
MspR9I	CCNGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	97, 212
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	3 cut(s)	38, 94, 273
NlaIII	CATG	3 cut(s)	52, 181, 247
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 276
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	257
PmaCI	CACGTG	2 cut(s)	186, 285
PmlI	CACGTG	2 cut(s)	186, 285
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	2 cut(s)	186, 285
PspCI	CACGTG	2 cut(s)	186, 285
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	75, 123, 198
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	38, 94, 273
Sau96I	GGNCC	3 cut(s)	75, 123, 198
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	196
SfoI	GGCGCC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	344, 360
SsiI	CCGC	2 cut(s)	5, 264
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	101, 334
TaiI	ACGT	4 cut(s)	138, 144, 188, 287
TaqI	TCGA	6 cut(s)	22, 144, 168, 270, 279, 328
TasI	AATT	2 cut(s)	344, 360
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	198
XceI	RCATGY	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.