Rh7CG341200

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016457
Physical Location & Seq
Reverse (-)
38166931 .. 38167491
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG341200.1

Sequence Viewer

Length: 561 bp
ATGAACTCAACCAAAATTCACATCCCAGAAATTAAAAATCAAAATCAAATCCCAACAGTGGATCGCTCAACATCGACGTTGAGGACCTCGGCACTTCCTCCTACTACTTCATCGCCGTTGCGTCTCCTCCTCATCACCAACACCAAAACTCGAGGACTTATCGCCTGCAGCACCGGTGCCGGCGTCGAGACCTTAGCCAACAAGTTCCCTGAAGTCTTCACGGCCACGTGTCTCTCCCTGTCCGACACCCTCAACGCCCAGCTCCAACGTCCTCCTGTCTCCTGCATGTCCACAGCGCCAGAATCCGCCATCGAGATCATTGACACGTGGCTTAACACTCCCTTCAAAGTGCCTTGTCCTGCTTCGAAGTTGAAACCTTGGCCGGAAATTGGAGCTGATTCTGATTTGAAGGAGAGCTCTTATTTCATTTGCTGTTTGGTGAAGAATCAGAATTTGAATCCGATTGATATAATTTCGGGTCATTCAATGAAGATACTGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTATTTGATGAAGTTGTCAAGGCTGTGA

Protein Analysis

186

Amino Acids

20.14

Weight (kDa)

8.71

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 14 - 116 1.3e-08 Ribose/Galactose Isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 2 cut(s) 222, 380
AcsI RAATTY 2 cut(s) 15, 451
AcuI CTGAAG 1 cut(s) 231
AcvI CACGTG 2 cut(s) 228, 327
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 58, 389
AflIII ACRYGT 2 cut(s) 227, 324
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 5 cut(s) 346, 373, 409, 457, 486
AluBI AGCT 3 cut(s) 262, 395, 417
AluI AGCT 3 cut(s) 262, 395, 417
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 4 cut(s) 128, 182, 236, 283
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 2 cut(s) 222, 380
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 15, 451
AsiGI ACCGGT 1 cut(s) 173
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 127, 451
AsuII TTCGAA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 419
BbrPI CACGTG 2 cut(s) 228, 327
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 317, 511
BceAI ACGGC 2 cut(s) 100, 237
BcoDI GTCTC 4 cut(s) 128, 182, 236, 283
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 365
BsaAI YACGTR 2 cut(s) 228, 327
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 87, 377
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 389
Bse118I RCCGGY 2 cut(s) 173, 179
BseDI CCNNGG 2 cut(s) 87, 377
BseGI GGATG 2 cut(s) 21, 522
BseLI CCNNNNNNNGG 2 cut(s) 58, 389
BseMII CTCAG 1 cut(s) 488
BseRI GAGGAG 2 cut(s) 116, 119
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 258
BshFI GGCC 2 cut(s) 224, 382
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 174, 180, 383
BslI CCNNNNNNNGG 2 cut(s) 58, 389
BsmAI GTCTC 4 cut(s) 128, 182, 236, 283
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 224, 382
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 61, 315
BspACI CCGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 224, 382
BspCNI CTCAG 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 173, 179
BssAI RCCGGY 2 cut(s) 173, 179
BssECI CCNNGG 2 cut(s) 87, 377
BssMI GATC 2 cut(s) 61, 315
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 183
BstBAI YACGTR 2 cut(s) 228, 327
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 166, 181
BstDEI CTNAG 2 cut(s) 193, 497
BstF5I GGATG 2 cut(s) 21, 522
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 64, 318
BstMAI GTCTC 4 cut(s) 128, 182, 236, 283
BstMBI GATC 2 cut(s) 61, 315
BstNSI RCATGY 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 224, 382
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 21, 522
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 166, 181
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 173, 179
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 2 cut(s) 110, 172
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 1 cut(s) 286
CviJI RGCY 8 cut(s) 197, 224, 262, 331, 382, 395, 417, 556
CviKI_1 RGCY 8 cut(s) 197, 224, 262, 331, 382, 395, 417, 556
DdeI CTNAG 2 cut(s) 193, 497
DpnI GATC 2 cut(s) 63, 317
DpnII GATC 2 cut(s) 61, 315
EaeI YGGCCR 2 cut(s) 222, 380
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 231
Eco72I CACGTG 2 cut(s) 228, 327
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 287, 470, 532
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 8, 529
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 2 cut(s) 224, 382
HapII CCGG 3 cut(s) 174, 180, 383
HgaI GACGC 2 cut(s) 110, 172
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 4 cut(s) 302, 398, 445, 457
HpaII CCGG 3 cut(s) 174, 180, 383
HphI GGTGA 2 cut(s) 127, 451
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 4 cut(s) 244, 403, 450, 462
Hpy188III TCNNGA 2 cut(s) 187, 313
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 2 cut(s) 79, 188
HpyAV CCTTC 2 cut(s) 352, 403
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 4 cut(s) 77, 227, 268, 326
HpyCH4V TGCA 2 cut(s) 168, 285
HpyF3I CTNAG 2 cut(s) 193, 497
HpySE526I ACGT 4 cut(s) 77, 227, 268, 326
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 61, 315
LmnI GCTCC 2 cut(s) 267, 392
Lsp1109I GCAGC 1 cut(s) 180
MaeII ACGT 4 cut(s) 77, 227, 268, 326
MalI GATC 2 cut(s) 63, 317
MboI GATC 2 cut(s) 61, 315
MboII GAAGA 3 cut(s) 208, 454, 502
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 5 cut(s) 15, 30, 387, 451, 471
MmeI TCCRAC 2 cut(s) 267, 289
MnlI CCTC 8 cut(s) 75, 97, 108, 137, 140, 146, 260, 282
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 2 cut(s) 33, 333
MspI CCGG 3 cut(s) 174, 180, 383
NaeI GCCGGC 1 cut(s) 181
NdeII GATC 2 cut(s) 61, 315
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 68
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 4 cut(s) 302, 398, 445, 457
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 1 cut(s) 170
PmaCI CACGTG 2 cut(s) 228, 327
PmlI CACGTG 2 cut(s) 228, 327
Ppu21I YACGTR 2 cut(s) 228, 327
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 84
PspCI CACGTG 2 cut(s) 228, 327
PspFI CCCAGC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PspXI VCTCGAGB 1 cut(s) 150
PstI CTGCAG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 33, 333
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 61, 315
Sau96I GGNCC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 365
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 5 cut(s) 15, 30, 387, 451, 471
SsiI CCGC 1 cut(s) 306
SstI GAGCTC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 4 cut(s) 80, 230, 271, 329
TaqI TCGA 5 cut(s) 74, 151, 186, 312, 365
TasI AATT 5 cut(s) 15, 30, 387, 451, 471
TfiI GAWTC 4 cut(s) 302, 398, 445, 457
Tru1I TTAA 2 cut(s) 33, 333
Tru9I TTAA 2 cut(s) 33, 333
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 5 cut(s) 17, 99, 415, 503, 557
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 2 cut(s) 15, 451
XceI RCATGY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.