Rh7BG105600

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016457
Physical Location & Seq
Forward (+)
7927471 .. 7928073
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG105600.1

Sequence Viewer

Length: 603 bp
ATGAACTCAACCAAAATTCACATCCCAGAAATTAAAAATCAAAATCAAATCCCAGCAGTGGCTCACTCAACATCGACGTCGAGGACCACGGCACTTCCTCCTACTACTCCATCGCCGCCGCGTCTCCTCCTCGCCGCCGACACCAAAACTCGCGGACTTGTTGCCTGCAGCACCGGCGTCGGCGTCGCGACCTTCGCCAACAAGTTCCCCAGAGTCTTCGTGGCCACATGTCTCTCCCTGTCCGTCGCCCTCAATGCCGAGCTCCAACGTCCTCCCATCTCCGGCATGTCCACGGCACCAGAATTCGCCATCGAGATCGTCGACACGTGGCTCAACACTCCCTTCAAAGCGCCATGTCCTGCGTCGAAGTCGAAACCTTGGCCAGAAATTGGAGCTGATTCTGATTTGAAGGAGAGCTCTTGTTCCATCTGTTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTTCGTGTCGTTTAATGAAGATACTGAGTCCTTTATCAAGTGGGATGGGAAATGGGATATGTTCTTTGATGAAGATCTCGAGGCTGCGAACAAGGCTATTGATCAAGAAATTAGAGAATGGGGGTAAGTGA

Protein Analysis

200

Amino Acids

21.42

Weight (kDa)

9.66

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 45 - 116 7.5e-09 Ribose/Galactose Isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 1 cut(s) 321
AccII CGCG 3 cut(s) 121, 153, 188
AciI CCGC 4 cut(s) 116, 119, 135, 153
AcoI YGGCCR 2 cut(s) 222, 380
AcsI RAATTY 3 cut(s) 15, 302, 451
AcvI CACGTG 1 cut(s) 327
AcyI GRCGYC 3 cut(s) 77, 177, 183
AfiI CCNNNNNNNGG 3 cut(s) 58, 281, 389
AflIII ACRYGT 2 cut(s) 227, 324
AgsI TTSAA 3 cut(s) 346, 409, 457
AluBI AGCT 3 cut(s) 262, 395, 417
AluI AGCT 3 cut(s) 262, 395, 417
Alw21I GWGCWC 2 cut(s) 264, 419
Alw26I GTCTC 2 cut(s) 128, 236
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 2 cut(s) 222, 380
ApeKI GCWGC 2 cut(s) 168, 556
ApoI RAATTY 3 cut(s) 15, 302, 451
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 2 cut(s) 224, 382
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 264, 419
BbrPI CACGTG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 2 cut(s) 264, 419
BbvI GCAGC 2 cut(s) 180, 543
BccI CCATC 5 cut(s) 118, 284, 317, 434, 511
BceAI ACGGC 2 cut(s) 105, 309
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 128, 236
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 353
BglII AGATCT 1 cut(s) 546
BisI GCNGC 5 cut(s) 116, 119, 135, 169, 557
BlsI GCNGC 5 cut(s) 117, 120, 136, 170, 558
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 545
BsaHI GRCGYC 3 cut(s) 77, 177, 183
BsaJI CCNNGG 3 cut(s) 87, 291, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 281, 389
Bse118I RCCGGY 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 545
BseDI CCNNGG 3 cut(s) 87, 291, 377
BseGI GGATG 2 cut(s) 21, 522
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BseMII CTCAG 1 cut(s) 488
BseRI GAGGAG 2 cut(s) 116, 119
BseXI GCAGC 2 cut(s) 180, 543
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 3 cut(s) 121, 153, 188
BshFI GGCC 2 cut(s) 224, 382
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 264, 419
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 2 cut(s) 174, 282
BslI CCNNNNNNNGG 3 cut(s) 58, 281, 389
BsmAI GTCTC 2 cut(s) 128, 236
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 224, 382
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 2 cut(s) 264, 419
Bsp143I GATC 3 cut(s) 315, 546, 573
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 4 cut(s) 116, 119, 135, 153
BspANI GGCC 2 cut(s) 224, 382
BspCNI CTCAG 1 cut(s) 489
BspFNI CGCG 3 cut(s) 121, 153, 188
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 87, 291, 377
BssMI GATC 3 cut(s) 315, 546, 573
BssNI GRCGYC 3 cut(s) 77, 177, 183
BssT1I CCWWGG 1 cut(s) 377
BstACI GRCGYC 3 cut(s) 77, 177, 183
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 497
BstDSI CCRYGG 2 cut(s) 87, 291
BstF5I GGATG 2 cut(s) 21, 522
BstFNI CGCG 3 cut(s) 121, 153, 188
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 318, 549, 576
BstMAI GTCTC 2 cut(s) 128, 236
BstMBI GATC 3 cut(s) 315, 546, 573
BstMWI GCNNNNNNNGC 4 cut(s) 174, 194, 254, 565
BstNSI RCATGY 2 cut(s) 231, 289
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 3 cut(s) 121, 153, 188
BstV1I GCAGC 2 cut(s) 180, 543
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 2 cut(s) 224, 382
BtgI CCRYGG 2 cut(s) 87, 291
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 21, 522
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 4 cut(s) 110, 166, 172, 351
CviAII CATG 3 cut(s) 228, 286, 354
CviJI RGCY 9 cut(s) 62, 224, 262, 331, 382, 395, 417, 556, 568
CviKI_1 RGCY 9 cut(s) 62, 224, 262, 331, 382, 395, 417, 556, 568
DdeI CTNAG 1 cut(s) 497
DpnI GATC 3 cut(s) 317, 548, 575
DpnII GATC 3 cut(s) 315, 546, 573
EaeI YGGCCR 2 cut(s) 222, 380
Ecl136II GAGCTC 2 cut(s) 262, 417
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 2 cut(s) 264, 419
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 2 cut(s) 262, 417
Eco72I CACGTG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 550
EcoICRI GAGCTC 2 cut(s) 262, 417
EcoRI GAATTC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 2 cut(s) 264, 419
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 231, 289, 357
FaiI YATR 5 cut(s) 229, 287, 355, 470, 532
FatI CATG 3 cut(s) 227, 285, 353
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 116, 119, 135, 169, 557
FokI GGATG 2 cut(s) 8, 529
FriOI GRGCYC 2 cut(s) 264, 419
Fsp4HI GCNGC 5 cut(s) 116, 119, 135, 169, 557
GlaI GCGC 1 cut(s) 351
GluI GCNGC 5 cut(s) 116, 119, 135, 169, 557
GsaI CCCAGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 2 cut(s) 224, 382
HapII CCGG 2 cut(s) 174, 282
HgaI GACGC 4 cut(s) 110, 166, 172, 351
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 3 cut(s) 77, 177, 183
Hin1II CATG 3 cut(s) 231, 289, 357
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 5 cut(s) 213, 398, 445, 457, 499
HpaII CCGG 2 cut(s) 174, 282
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 291, 322
Hpy188I TCNGA 3 cut(s) 403, 450, 462
Hpy188III TCNNGA 4 cut(s) 187, 313, 550, 577
Hpy8I GTNNAC 2 cut(s) 291, 322
Hpy99I CGWCG 7 cut(s) 79, 82, 182, 188, 248, 323, 367
HpyAV CCTTC 3 cut(s) 202, 352, 403
HpyCH4IV ACGT 3 cut(s) 77, 268, 326
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 194, 254, 565
HpyF3I CTNAG 1 cut(s) 497
HpySE526I ACGT 3 cut(s) 77, 268, 326
Hsp92I GRCGYC 3 cut(s) 77, 177, 183
Hsp92II CATG 3 cut(s) 231, 289, 357
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 3 cut(s) 315, 546, 573
LmnI GCTCC 2 cut(s) 267, 392
Lsp1109I GCAGC 2 cut(s) 180, 543
MaeII ACGT 3 cut(s) 77, 268, 326
MalI GATC 3 cut(s) 317, 548, 575
MboI GATC 3 cut(s) 315, 546, 573
MboII GAAGA 4 cut(s) 208, 454, 502, 556
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 264, 419
MlsI TGGCCA 2 cut(s) 224, 382
MluCI AATT 7 cut(s) 15, 30, 302, 387, 451, 471, 581
MluNI TGGCCA 2 cut(s) 224, 382
MlyI GAGTC 2 cut(s) 222, 508
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 7 cut(s) 75, 108, 137, 140, 260, 282, 546
Mox20I TGGCCA 2 cut(s) 224, 382
MscI TGGCCA 2 cut(s) 224, 382
MseI TTAA 2 cut(s) 33, 485
Msp20I TGGCCA 2 cut(s) 224, 382
MspI CCGG 2 cut(s) 174, 282
MvnI CGCG 3 cut(s) 121, 153, 188
MwoI GCNNNNNNNGC 4 cut(s) 174, 194, 254, 565
NdeII GATC 3 cut(s) 315, 546, 573
NlaIII CATG 3 cut(s) 231, 289, 357
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 283
NruI TCGCGA 1 cut(s) 188
NspI RCATGY 2 cut(s) 231, 289
PaeR7I CTCGAG 1 cut(s) 550
PciI ACATGT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 3 cut(s) 398, 445, 457
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 5 cut(s) 117, 120, 136, 170, 558
PleI GAGTC 2 cut(s) 221, 507
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 2 cut(s) 221, 507
Ppu21I YACGTR 1 cut(s) 327
PscI ACATGT 1 cut(s) 227
Psp124BI GAGCTC 2 cut(s) 264, 419
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 546
RruI TCGCGA 1 cut(s) 188
SacI GAGCTC 2 cut(s) 264, 419
SalI GTCGAC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 33, 485
SatI GCNGC 5 cut(s) 116, 119, 135, 169, 557
Sau3AI GATC 3 cut(s) 315, 546, 573
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 2 cut(s) 222, 508
SduI GDGCHC 2 cut(s) 264, 419
SetI ASST 8 cut(s) 80, 194, 264, 271, 329, 379, 397, 419
SfcI CTRYAG 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 550
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 7 cut(s) 15, 30, 302, 387, 451, 471, 581
SsiI CCGC 4 cut(s) 116, 119, 135, 153
SstI GAGCTC 2 cut(s) 264, 419
StyI CCWWGG 1 cut(s) 377
TaiI ACGT 3 cut(s) 80, 271, 329
TaqI TCGA 7 cut(s) 74, 80, 312, 321, 365, 371, 551
TasI AATT 7 cut(s) 15, 30, 302, 387, 451, 471, 581
TauI GCSGC 3 cut(s) 118, 121, 137
TfiI GAWTC 3 cut(s) 398, 445, 457
Tru1I TTAA 2 cut(s) 33, 485
Tru9I TTAA 2 cut(s) 33, 485
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 168, 556
TspDTI ATGAA 3 cut(s) 17, 503, 557
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 3 cut(s) 15, 302, 451
XceI RCATGY 2 cut(s) 231, 289
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 433
XhoI CTCGAG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 321
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.