RLG00000003841

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013759
Physical Location & Seq
Reverse (-)
53412200 .. 53427208
15009 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003841

Sequence Viewer

Length: 438 bp
ATGGCATTTGCAAGCTCAAGCCCAATGCCAAACGTGGACGTGCAAAAAGCCATTTCAAAGCTCAAAAGCATCTTCTTGAAGAAAGAGCTCGATCTCTCACCGCAAGTGACCCTAATGCTGGCGGAGATTCAAGAACACCAAGGCCTAATGAAGACATACGAGATTACGATCAAGGAGCCCGAAGCTCACTGCAAAGGTTTAGCATTTCCACACTCAAATCCGAACTCGAAGAGGTACCTAATTCATGAGAAGCATGCTAAAGAGGGGAGAAGAGAGCCAAGATATGGAGAATTGGAGATTGAGGATATGTGGATTTGGTTTTCCAGAGGATTTGGTTCGGTGAAGCAAGAGTCGAAAGTGGAGATTGATTTGAATGACGATGATGAGGAAGAAGAGGAAGAGGATGGTAGTGGGGATGTGAAAATGGATGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

146

Amino Acids

16.67

Weight (kDa)

4.85

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 16 - 63 1e-06 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 2 cut(s) 101, 122
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 118, 284
AgsI TTSAA 4 cut(s) 57, 79, 131, 373
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 4 cut(s) 15, 61, 88, 185
AluI AGCT 4 cut(s) 15, 61, 88, 185
Alw21I GWGCWC 1 cut(s) 90
AoxI GGCC 1 cut(s) 142
Asp718I GGTACC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 90, 352
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 90, 180
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 177, 236
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 284
Bse8I GATNNNNATC 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 3 cut(s) 409, 421, 433
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 118, 284
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 118, 284
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 90, 180
Bsp143I GATC 2 cut(s) 91, 168
BspACI CCGC 2 cut(s) 101, 122
BspANI GGCC 1 cut(s) 144
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 177, 236
BspT107I GGYRCC 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 91, 168
BssT1I CCWWGG 1 cut(s) 139
Bst6I CTCTTC 4 cut(s) 224, 265, 387, 393
BstC8I GCNNGC 3 cut(s) 13, 120, 255
BstF5I GGATG 3 cut(s) 409, 421, 433
BstKTI GATC 2 cut(s) 94, 171
BstMBI GATC 2 cut(s) 91, 168
BstNSI RCATGY 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 144
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 3 cut(s) 409, 421, 433
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 13, 120, 255
CciI TCATGA 1 cut(s) 244
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 245, 254
CviJI RGCY 9 cut(s) 15, 21, 50, 61, 88, 144, 178, 185, 277
CviKI_1 RGCY 9 cut(s) 15, 21, 50, 61, 88, 144, 178, 185, 277
CviQI GTAC 1 cut(s) 235
DpnI GATC 2 cut(s) 93, 170
DpnII GATC 2 cut(s) 91, 168
Eam1104I CTCTTC 4 cut(s) 224, 265, 387, 393
EarI CTCTTC 4 cut(s) 224, 265, 387, 393
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 144
Eco24I GRGCYC 2 cut(s) 90, 180
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 90, 180
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 248, 257
FaiI YATR 5 cut(s) 157, 246, 255, 285, 308
FatI CATG 2 cut(s) 244, 253
FokI GGATG 2 cut(s) 416, 428
FriOI GRGCYC 2 cut(s) 90, 180
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 2 cut(s) 248, 257
HinfI GANTC 2 cut(s) 127, 350
HphI GGTGA 2 cut(s) 90, 352
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 4 cut(s) 76, 131, 245, 324
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 33, 39
HpyCH4V TGCA 3 cut(s) 11, 43, 192
HpySE526I ACGT 2 cut(s) 33, 39
Hsp92II CATG 2 cut(s) 248, 257
KpnI GGTACC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 91, 168
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 104, 337
LweI GCATC 1 cut(s) 78
MaeII ACGT 2 cut(s) 33, 39
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 93, 170
MboI GATC 2 cut(s) 91, 168
MboII GAAGA 8 cut(s) 64, 91, 163, 241, 282, 401, 404, 410
MhlI GDGCHC 2 cut(s) 90, 180
MluCI AATT 2 cut(s) 240, 290
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 7 cut(s) 225, 256, 295, 320, 379, 388, 394
NdeII GATC 2 cut(s) 91, 168
NlaIII CATG 2 cut(s) 248, 257
NlaIV GGNNCC 2 cut(s) 177, 236
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 144
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 284
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 177, 236
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SacI GAGCTC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 91, 168
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 2 cut(s) 90, 180
SetI ASST 9 cut(s) 17, 36, 42, 63, 90, 187, 199, 236, 240
SfaNI GCATC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SphI GCATGC 1 cut(s) 257
Sse9I AATT 2 cut(s) 240, 290
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 2 cut(s) 101, 122
SstI GAGCTC 1 cut(s) 90
StuI AGGCCT 1 cut(s) 144
StyI CCWWGG 1 cut(s) 139
TaiI ACGT 2 cut(s) 36, 42
TaqI TCGA 3 cut(s) 90, 227, 353
TasI AATT 2 cut(s) 240, 290
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 164, 233
TspRI CASTG 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 284
XceI RCATGY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.