Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013759

Physical Location & Seq

Genomic Coordinates Reverse (-)

1676850 .. 1680043

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTGAAAGCTAGAGCTGCACTTCCCATTGCTGGTTTGAAGGGTGATATATTGCAATTGTTGCAGGATAATAATGTTCAAGTAGTCGTTGGGGAAACGGGATCAGGAAAAACAACTCAGGTTCCACAATTTATATTGGATGACATGATCCAGTCAGGACGTGGTGGCCCCTGTAACATTATATGCACACAACCATGGAGAATAGCGGCTATTTCTGTGGCCGATAGAGTCGCTGATGAGCGTTGTGAACCTTCACCTGGTTCAAATGGTTCTTTGGTTGGTTATCAAGTTCGCCTTCATAGTGCAAGTAATGAAAAGACTAAGCTTCTGTTTTGCACGACAGTTTATGTCCGCTACAAGTTACGTGACTGTCGTTGCACAGAAATAGACTTGAAGTCTACAAAGAATGGCCGCAGTGGTTCTCTTTTCCAGAAAGACCTTGGCAAGATTCATCATGTTGCTTCAATAATGGTGGCAAGAGATGTGGCTTCAAGAGAGTTTGATATCACTCATGTTGCACAGAATCAGAGTTCTTGCTCGAAATTCTCAAATGGGTACCCTTCCTTTTCTTCTTCTTGTAAACTATTTAAAGCTGATCAGAAGCTCCGATCCAGCGGAGCAAGTTGGTTAGGACTAGCCACAAGGTCATTAGCCTCCGAGTCGCAACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAGCCCAACACCAAACGTGGACGAGCTGAAAGCCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAATTGACCCTAATGCTGACGGAGATTCAAGAACAACAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016282 GO:0032991 GO:0043021 GO:0043024 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0070993 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

276

Amino Acids

30.07

Weight (kDa)

8.94

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0109531 RchiOBHm_Chr5g0050071 RchiOBHm_Chr5g0075961
rosa_laevigata	RLG00000003841 RLG00000008228 RLG00000034196 RLG00000035437
rosa_multiflora	Rmu_co8126230.1_g000001 Rmu_ssc0000126.1_g000067
rosa_samantha	Rh2CG021100 Rh2CG214800 Rh2CG230100 Rh3DG084900 Rh5CG235800 Rh6AG255600 Rh6BG163300 Rh6CG235600 Rh6CG235700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	5 cut(s)	206, 352, 412, 615, 785
AclWI	GGATC	3 cut(s)	109, 142, 603
AcoI	YGGCCR	2 cut(s)	219, 409
AcsI	RAATTY	1 cut(s)	542
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	32, 257
AgsI	TTSAA	9 cut(s)	7, 40, 80, 264, 394, 465, 492, 763, 815
AhdI	GACNNNNNGTC	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	256
Alw21I	GWGCWC	2 cut(s)	747, 774
AlwI	GGATC	3 cut(s)	109, 142, 603
AoxI	GGCC	4 cut(s)	166, 219, 409, 825
ApeKI	GCWGC	2 cut(s)	17, 753
ApoI	RAATTY	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	56, 246
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	2 cut(s)	747, 774
Bbv12I	GWGCWC	2 cut(s)	747, 774
BbvI	GCAGC	2 cut(s)	4, 765
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	595
BfaI	CTAG	2 cut(s)	12, 635
BisI	GCNGC	5 cut(s)	18, 207, 412, 754, 785
BlsI	GCNGC	5 cut(s)	19, 208, 413, 755, 786
Bme1390I	CCNGG	1 cut(s)	258
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	3 cut(s)	123, 169, 557
BmrFI	CCNGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	194, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 257
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	194, 439
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	32, 257
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	4, 765
BshFI	GGCC	4 cut(s)	168, 221, 411, 827
BshNI	GGYRCC	1 cut(s)	555
BsiHKAI	GWGCWC	2 cut(s)	747, 774
BslI	CCNNNNNNNGG	2 cut(s)	32, 257
BsnI	GGCC	4 cut(s)	168, 221, 411, 827
Bsp1286I	GDGCHC	2 cut(s)	747, 774
Bsp143I	GATC	5 cut(s)	101, 147, 595, 608, 775
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	5 cut(s)	206, 352, 412, 615, 785
BspANI	GGCC	4 cut(s)	168, 221, 411, 827
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	123, 169, 557
BspPI	GGATC	3 cut(s)	109, 142, 603
BspT107I	GGYRCC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	194, 439
BssMI	GATC	5 cut(s)	101, 147, 595, 608, 775
BssT1I	CCWWGG	2 cut(s)	194, 439
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	343, 371
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	2 cut(s)	117, 321
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	5 cut(s)	104, 150, 598, 611, 778
BstMBI	GATC	5 cut(s)	101, 147, 595, 608, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 61
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	4, 765
BsuRI	GGCC	4 cut(s)	168, 221, 411, 827
BtgI	CCRYGG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	4 cut(s)	453, 465, 488, 500
CviAII	CATG	4 cut(s)	145, 195, 455, 512
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	117, 321
DpnI	GATC	5 cut(s)	103, 149, 597, 610, 777
DpnII	GATC	5 cut(s)	101, 147, 595, 608, 775
DraI	TTTAAA	1 cut(s)	589
DriI	GACNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	2 cut(s)	219, 409
Eam1105I	GACNNNNNGTC	1 cut(s)	394
Ecl136II	GAGCTC	2 cut(s)	745, 772
Eco130I	CCWWGG	2 cut(s)	194, 439
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	2 cut(s)	747, 774
Eco32I	GATATC	1 cut(s)	505
Eco53kI	GAGCTC	2 cut(s)	745, 772
EcoICRI	GAGCTC	2 cut(s)	745, 772
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	194, 439
EcoT38I	GRGCYC	2 cut(s)	747, 774
ErhI	CCWWGG	2 cut(s)	194, 439
FaeI	CATG	4 cut(s)	148, 198, 458, 515
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	4 cut(s)	144, 194, 454, 511
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	18, 207, 412, 754, 785
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	747, 774
Fsp4HI	GCNGC	5 cut(s)	18, 207, 412, 754, 785
FspBI	CTAG	2 cut(s)	12, 635
GluI	GCNGC	5 cut(s)	18, 207, 412, 754, 785
HaeIII	GGCC	4 cut(s)	168, 221, 411, 827
Hin1II	CATG	4 cut(s)	148, 198, 458, 515
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	5 cut(s)	228, 448, 523, 659, 811
HphI	GGTGA	2 cut(s)	56, 246
Hpy166II	GTNNAC	4 cut(s)	248, 399, 581, 721
Hpy188I	TCNGA	4 cut(s)	528, 600, 608, 658
Hpy188III	TCNNGA	6 cut(s)	105, 156, 430, 492, 760, 815
Hpy8I	GTNNAC	4 cut(s)	248, 399, 581, 721
HpyAV	CCTTC	4 cut(s)	34, 261, 305, 570
HpyCH4III	ACNGT	2 cut(s)	343, 371
HpyCH4IV	ACGT	3 cut(s)	160, 364, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 61
HpyF3I	CTNAG	2 cut(s)	117, 321
HpySE526I	ACGT	3 cut(s)	160, 364, 717
Hsp92II	CATG	4 cut(s)	148, 198, 458, 515
KpnI	GGTACC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	5 cut(s)	101, 147, 595, 608, 775
LmnI	GCTCC	2 cut(s)	609, 617
Lsp1109I	GCAGC	2 cut(s)	4, 765
MabI	ACCWGGT	1 cut(s)	256
MaeI	CTAG	2 cut(s)	12, 635
MaeII	ACGT	3 cut(s)	160, 364, 717
MaeIII	GTNAC	3 cut(s)	173, 360, 365
MalI	GATC	5 cut(s)	103, 149, 597, 610, 777
MboI	GATC	5 cut(s)	101, 147, 595, 608, 775
MboII	GAAGA	3 cut(s)	561, 564, 775
MfeI	CAATTG	2 cut(s)	56, 788
MhlI	GDGCHC	2 cut(s)	747, 774
MluCI	AATT	4 cut(s)	56, 128, 542, 788
MlyI	GAGTC	2 cut(s)	237, 668
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	1 cut(s)	664
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	2 cut(s)	56, 788
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	17, 61
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	5 cut(s)	101, 147, 595, 608, 775
NlaIII	CATG	4 cut(s)	148, 198, 458, 515
NlaIV	GGNNCC	3 cut(s)	123, 169, 557
NmuCI	GTSAC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	448, 523, 811
PkrI	GCNGC	5 cut(s)	19, 208, 413, 755, 786
PleI	GAGTC	2 cut(s)	236, 667
PpsI	GAGTC	2 cut(s)	236, 667
Ppu21I	YACGTR	1 cut(s)	365
Psp124BI	GAGCTC	2 cut(s)	747, 774
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	123, 169, 557
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	2 cut(s)	747, 774
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	5 cut(s)	18, 207, 412, 754, 785
Sau3AI	GATC	5 cut(s)	101, 147, 595, 608, 775
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	237, 668
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	747, 774
SexAI	ACCWGGT	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	4 cut(s)	56, 128, 542, 788
SseBI	AGGCCT	1 cut(s)	827
SsiI	CCGC	5 cut(s)	206, 352, 412, 615, 785
SspMI	CTAG	2 cut(s)	12, 635
SstI	GAGCTC	2 cut(s)	747, 774
StuI	AGGCCT	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	194, 439
TaaI	ACNGT	2 cut(s)	343, 371
TaiI	ACGT	3 cut(s)	163, 367, 720
TaqI	TCGA	2 cut(s)	539, 774
TasI	AATT	4 cut(s)	56, 128, 542, 788
TauI	GCSGC	3 cut(s)	209, 414, 787
TfiI	GAWTC	3 cut(s)	448, 523, 811
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	17, 753
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	287, 327, 440
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 437
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	2 cut(s)	12, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.