Rh3DG084900

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013759
Physical Location & Seq
Forward (+)
6651609 .. 6651857
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG084900.1

Sequence Viewer

Length: 249 bp
ATGGCATTTGCAAGCTCAAGCCCAACGCCAAACGTGGACGAGCTGAAAGCCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAATTGACCCTAATGCTGACGGAGATTCAAGAACAACAGGGCCTAATGAAGACATACGAGATCATGATCAAGGAGTCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCCAAGAGGTACCTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

5.07

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 12 - 79 9e-11 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 2 cut(s) 101, 190
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 2 cut(s) 79, 131
AluBI AGCT 6 cut(s) 15, 43, 61, 72, 88, 185
AluI AGCT 6 cut(s) 15, 43, 61, 72, 88, 185
Alw21I GWGCWC 2 cut(s) 63, 90
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 63, 90
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 63, 90
BbvI GCAGC 1 cut(s) 81
BclI TGATCA 1 cut(s) 168
BisI GCNGC 2 cut(s) 70, 101
BlsI GCNGC 2 cut(s) 71, 102
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 63, 90
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 63, 90
Bsp143I GATC 3 cut(s) 91, 162, 168
BspACI CCGC 2 cut(s) 101, 190
BspANI GGCC 1 cut(s) 144
BspHI TCATGA 2 cut(s) 165, 245
BspLI GGNNCC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 235
BssMI GATC 3 cut(s) 91, 162, 168
BstC8I GCNNGC 1 cut(s) 13
BstKTI GATC 3 cut(s) 94, 165, 171
BstMBI GATC 3 cut(s) 91, 162, 168
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 2 cut(s) 165, 245
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 166, 246
CviJI RGCY 9 cut(s) 15, 21, 43, 50, 61, 72, 88, 144, 185
CviKI_1 RGCY 9 cut(s) 15, 21, 43, 50, 61, 72, 88, 144, 185
CviQI GTAC 1 cut(s) 236
DpnI GATC 3 cut(s) 93, 164, 170
DpnII GATC 3 cut(s) 91, 162, 168
Ecl136II GAGCTC 2 cut(s) 61, 88
Eco24I GRGCYC 2 cut(s) 63, 90
Eco53kI GAGCTC 2 cut(s) 61, 88
EcoICRI GAGCTC 2 cut(s) 61, 88
EcoO109I RGGNCCY 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 63, 90
FaeI CATG 2 cut(s) 169, 249
FaiI YATR 3 cut(s) 157, 167, 247
FatI CATG 2 cut(s) 165, 245
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 70, 101
FriOI GRGCYC 2 cut(s) 63, 90
Fsp4HI GCNGC 2 cut(s) 70, 101
GluI GCNGC 2 cut(s) 70, 101
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 2 cut(s) 169, 249
HinfI GANTC 2 cut(s) 127, 176
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 181, 223
Hpy188III TCNNGA 4 cut(s) 76, 131, 166, 246
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 11, 69
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 169, 249
KpnI GGTACC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 91, 162, 168
LpnPI CCDG 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 81
MaeII ACGT 1 cut(s) 33
MalI GATC 3 cut(s) 93, 164, 170
MboI GATC 3 cut(s) 91, 162, 168
MboII GAAGA 2 cut(s) 91, 163
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 63, 90
MluCI AATT 2 cut(s) 104, 241
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 1 cut(s) 226
MunI CAATTG 1 cut(s) 104
NdeII GATC 3 cut(s) 91, 162, 168
NlaIII CATG 2 cut(s) 169, 249
NlaIV GGNNCC 1 cut(s) 237
PagI TCATGA 2 cut(s) 165, 245
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 71, 102
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp124BI GAGCTC 2 cut(s) 63, 90
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SacI GAGCTC 2 cut(s) 63, 90
SatI GCNGC 2 cut(s) 70, 101
Sau3AI GATC 3 cut(s) 91, 162, 168
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 185
SduI GDGCHC 2 cut(s) 63, 90
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 104, 241
SsiI CCGC 2 cut(s) 101, 190
SstI GAGCTC 2 cut(s) 63, 90
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 104, 241
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 127
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 164, 234
TspGWI ACGGA 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.