Rh5CG235800

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013759
Physical Location & Seq
Forward (+)
24564992 .. 24565374
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG235800.1

Sequence Viewer

Length: 345 bp
ATGGCTGATCAGAAGCTCCGATCCAGCGGAGCAAGCTGGTTAGGACTATCCACAAGGTCATTAGCCTCCGAGTCGCAACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAGCCCAACGCCAAACGTGGACGAGCTTAAAGCCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAATTGACCCTAATGCTAGCGGAGATTCAAGAACAACAGGGCCTAATGAAGACATACGAGATCACGATCAAGGAGCCCGAAGCTCACCGCAAAGGTTTAGTCATTTCCACACTCAAATCCGAACTCCAAGAGGTACCTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

5.84

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 44 - 111 9.1e-10 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 331
AciI CCGC 4 cut(s) 27, 197, 218, 286
AclWI GGATC 1 cut(s) 15
AfaI GTAC 1 cut(s) 333
AgsI TTSAA 2 cut(s) 175, 227
AluBI AGCT 8 cut(s) 16, 36, 111, 139, 157, 168, 184, 281
AluI AGCT 8 cut(s) 16, 36, 111, 139, 157, 168, 184, 281
Alw21I GWGCWC 2 cut(s) 159, 186
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
Asp718I GGTACC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 3 cut(s) 159, 186, 276
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 159, 186
BbvI GCAGC 1 cut(s) 177
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 166, 197
BlsI GCNGC 2 cut(s) 167, 198
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 273, 333
BmtI GCTAGC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 159, 186
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 159, 186, 276
Bsp143I GATC 5 cut(s) 7, 20, 187, 258, 264
BspACI CCGC 4 cut(s) 27, 197, 218, 286
BspANI GGCC 1 cut(s) 240
BspHI TCATGA 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 273, 333
BspOI GCTAGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 331
BssMI GATC 5 cut(s) 7, 20, 187, 258, 264
BstC8I GCNNGC 3 cut(s) 34, 109, 216
BstKTI GATC 5 cut(s) 10, 23, 190, 261, 267
BstMBI GATC 5 cut(s) 7, 20, 187, 258, 264
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 34, 109, 216
CciI TCATGA 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 342
CviQI GTAC 1 cut(s) 332
DpnI GATC 5 cut(s) 9, 22, 189, 260, 266
DpnII GATC 5 cut(s) 7, 20, 187, 258, 264
Ecl136II GAGCTC 2 cut(s) 157, 184
Eco24I GRGCYC 3 cut(s) 159, 186, 276
Eco53kI GAGCTC 2 cut(s) 157, 184
EcoICRI GAGCTC 2 cut(s) 157, 184
EcoO109I RGGNCCY 1 cut(s) 238
EcoT38I GRGCYC 3 cut(s) 159, 186, 276
FaeI CATG 1 cut(s) 345
FaiI YATR 2 cut(s) 253, 343
FatI CATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 166, 197
FriOI GRGCYC 3 cut(s) 159, 186, 276
Fsp4HI GCNGC 2 cut(s) 166, 197
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 166, 197
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 1 cut(s) 345
HinfI GANTC 2 cut(s) 71, 223
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 4 cut(s) 12, 20, 70, 319
Hpy188III TCNNGA 4 cut(s) 172, 227, 262, 342
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 107, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 345
KpnI GGTACC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 20, 187, 258, 264
LmnI GCTCC 3 cut(s) 21, 29, 271
LpnPI CCDG 3 cut(s) 22, 37, 221
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 129
MalI GATC 5 cut(s) 9, 22, 189, 260, 266
MboI GATC 5 cut(s) 7, 20, 187, 258, 264
MboII GAAGA 2 cut(s) 187, 259
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 159, 186, 276
MluCI AATT 2 cut(s) 200, 337
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 2 cut(s) 76, 322
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 27
MunI CAATTG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 5 cut(s) 7, 20, 187, 258, 264
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 273, 333
PagI TCATGA 1 cut(s) 341
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 167, 198
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 2 cut(s) 159, 186
PspN4I GGNNCC 2 cut(s) 273, 333
PspPI GGNCC 1 cut(s) 238
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SacI GAGCTC 2 cut(s) 159, 186
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 166, 197
Sau3AI GATC 5 cut(s) 7, 20, 187, 258, 264
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 3 cut(s) 159, 186, 276
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 200, 337
SsiI CCGC 4 cut(s) 27, 197, 218, 286
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 2 cut(s) 159, 186
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 200, 337
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 260, 330
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.