Rh6CG235700

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013759
Physical Location & Seq
Reverse (-)
39974211 .. 39974635
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG235700.1

Sequence Viewer

Length: 387 bp
ATGGGTCTTCTTAGAATCAGAGTTCTTGCTCGAAATTCTCAAATGGCTGATCAGAAGCTCCGATCCAGCGGAGCAAGTTGGTTAGGACTATCCACAAGGTCATTAGCCTCCGAGTCGCAACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAGCCCAACGCCAAATGTGGACGAGCTGAAAGTCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCTCAATTGACCCTAATGTTGACGAAGATTCAAGAACAACAGGGCCTAATAAAGACATACGAGATCACGATCAAGGAGCCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCCAAGAGGTACCTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

128

Amino Acids

14.15

Weight (kDa)

9.37

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 58 - 125 1.7e-08 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 373
AciI CCGC 2 cut(s) 69, 328
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 1 cut(s) 375
AgsI TTSAA 2 cut(s) 217, 269
AluBI AGCT 7 cut(s) 58, 153, 181, 199, 210, 226, 323
AluI AGCT 7 cut(s) 58, 153, 181, 199, 210, 226, 323
Alw21I GWGCWC 2 cut(s) 201, 228
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 3 cut(s) 201, 228, 318
Bbv12I GWGCWC 2 cut(s) 201, 228
BbvI GCAGC 1 cut(s) 219
BclI TGATCA 1 cut(s) 49
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 315, 375
BpuEI CTTGAG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 305
BseJI GATNNNNATC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 201, 228
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 201, 228, 318
Bsp143I GATC 5 cut(s) 49, 62, 229, 300, 306
BspACI CCGC 2 cut(s) 69, 328
BspANI GGCC 1 cut(s) 282
BspHI TCATGA 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 315, 375
BspPI GGATC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 373
BssMI GATC 5 cut(s) 49, 62, 229, 300, 306
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 5 cut(s) 52, 65, 232, 303, 309
BstMBI GATC 5 cut(s) 49, 62, 229, 300, 306
BstV1I GCAGC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 151
CciI TCATGA 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 374
CviAII CATG 1 cut(s) 384
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 1 cut(s) 11
DpnI GATC 5 cut(s) 51, 64, 231, 302, 308
DpnII GATC 5 cut(s) 49, 62, 229, 300, 306
Ecl136II GAGCTC 2 cut(s) 199, 226
Eco24I GRGCYC 3 cut(s) 201, 228, 318
Eco53kI GAGCTC 2 cut(s) 199, 226
EcoICRI GAGCTC 2 cut(s) 199, 226
EcoO109I RGGNCCY 1 cut(s) 280
EcoT38I GRGCYC 3 cut(s) 201, 228, 318
FaeI CATG 1 cut(s) 387
FaiI YATR 2 cut(s) 295, 385
FatI CATG 1 cut(s) 383
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 208
FriOI GRGCYC 3 cut(s) 201, 228, 318
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 1 cut(s) 387
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 3 cut(s) 15, 113, 265
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 175, 258
Hpy188I TCNGA 5 cut(s) 20, 54, 62, 112, 361
Hpy188III TCNNGA 4 cut(s) 214, 269, 304, 384
Hpy8I GTNNAC 2 cut(s) 175, 258
HpyCH4V TGCA 2 cut(s) 149, 207
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 1 cut(s) 387
KpnI GGTACC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 49, 62, 229, 300, 306
LmnI GCTCC 3 cut(s) 63, 71, 313
LpnPI CCDG 2 cut(s) 79, 263
Lsp1109I GCAGC 1 cut(s) 219
MalI GATC 5 cut(s) 51, 64, 231, 302, 308
MboI GATC 5 cut(s) 49, 62, 229, 300, 306
MboII GAAGA 2 cut(s) 229, 274
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 201, 228, 318
MluCI AATT 3 cut(s) 34, 242, 379
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 3 cut(s) 118, 249, 364
MspA1I CMGCKG 1 cut(s) 69
MunI CAATTG 1 cut(s) 242
NdeII GATC 5 cut(s) 49, 62, 229, 300, 306
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 2 cut(s) 315, 375
PagI TCATGA 1 cut(s) 383
PfeI GAWTC 2 cut(s) 15, 265
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 2 cut(s) 201, 228
PspN4I GGNNCC 2 cut(s) 315, 375
PspPI GGNCC 1 cut(s) 280
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SacI GAGCTC 2 cut(s) 201, 228
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 5 cut(s) 49, 62, 229, 300, 306
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 3 cut(s) 201, 228, 318
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 3 cut(s) 34, 242, 379
SsiI CCGC 2 cut(s) 69, 328
SstI GAGCTC 2 cut(s) 201, 228
TaqI TCGA 2 cut(s) 31, 228
TasI AATT 3 cut(s) 34, 242, 379
TfiI GAWTC 2 cut(s) 15, 265
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 372
XapI RAATTY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.