Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8126230.1

Orthogroup ID

OG0013759

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 584

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8126230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 583 bp

atgaccaattggaccactcaaaatgctgagtgcaaccacacgacctctattggatcagacattacattgtccagttccgacaacagctccggactcgatacttctcgagagcttgtactgagaaacattatcatttgtcacgacccttccaactatctatcatcaccaaatcagctcacaataccacacagacctgaagtttatggctcgacaaataatgagcaaaagcaatcacagtgggagtggtctgcagattctgaaaatggagttcaagaacctagaaatgcagaactaaatcctcgcaaagatacagagagctcttatttgagacaagaactggagaataatcataaaaagcataaattcaaggaaatgttgaaagctagagctgcacttcccattgctggtttgaagggtgatatattgcaattgttgcaggataataatgttcaagtagtctgtggggaaacgggatcaggaaaaacaactcaggttccacaatttatattggatgacatgatccagtcaggacgtggtggaccctgtaacattatatgcacacaaccatggagaatagcggcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016282 GO:0032991 GO:0043021 GO:0043024 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0070993 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

5.53

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0109531 RchiOBHm_Chr5g0050071 RchiOBHm_Chr5g0075961
rosa_laevigata	RLG00000003841 RLG00000008228 RLG00000034196 RLG00000035437
rosa_multiflora	Rmu_co8126230.1_g000001 Rmu_ssc0000126.1_g000067
rosa_samantha	Rh2CG021100 Rh2CG214800 Rh2CG230100 Rh3DG084900 Rh5CG235800 Rh6AG255600 Rh6BG163300 Rh6CG235600 Rh6CG235700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	89
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	3 cut(s)	61, 481, 514
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	272, 367, 379, 412, 452
AjiI	CACGTC	1 cut(s)	533
AluBI	AGCT	6 cut(s)	87, 112, 175, 318, 383, 389
AluI	AGCT	6 cut(s)	87, 112, 175, 318, 383, 389
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	61, 481, 514
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	12, 539
AsuHPI	GGTGA	2 cut(s)	156, 428
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	12, 539
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	279, 384
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	390, 579
BlsI	GCNGC	2 cut(s)	391, 580
Bme18I	GGWCC	2 cut(s)	12, 539
BmeT110I	CYCGRG	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	12, 539
BmiI	GGNNCC	2 cut(s)	495, 541
BpmI	CTGGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	3 cut(s)	72, 342, 523
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	3 cut(s)	18, 110, 503
BseNI	ACTGG	3 cut(s)	72, 342, 523
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	53, 473, 519
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	1 cut(s)	578
BspCNI	CTCAG	3 cut(s)	19, 111, 502
BspEI	TCCGGA	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	495, 541
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	3 cut(s)	61, 481, 514
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	72, 342, 523
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	3 cut(s)	53, 473, 519
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	27, 119, 489
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	3 cut(s)	56, 476, 522
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	53, 473, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 433
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	12, 539
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	218, 253
CviAII	CATG	2 cut(s)	517, 567
CviJI	RGCY	8 cut(s)	87, 112, 175, 207, 318, 383, 389, 581
CviKI_1	RGCY	8 cut(s)	87, 112, 175, 207, 318, 383, 389, 581
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	27, 119, 489
DpnI	GATC	3 cut(s)	55, 475, 521
DpnII	GATC	3 cut(s)	53, 473, 519
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	12, 539
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	2 cut(s)	520, 570
FaiI	YATR	9 cut(s)	204, 351, 360, 422, 506, 518, 554, 556, 568
FatI	CATG	2 cut(s)	516, 566
Fnu4HI	GCNGC	2 cut(s)	390, 579
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	390, 579
FspBI	CTAG	2 cut(s)	279, 384
GluI	GCNGC	2 cut(s)	390, 579
GsuI	CTGGAG	1 cut(s)	359
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	2 cut(s)	520, 570
HinfI	GANTC	2 cut(s)	93, 254
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	156, 428
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	3 cut(s)	58, 79, 259
Hpy188III	TCNNGA	7 cut(s)	90, 105, 107, 140, 272, 477, 528
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	156, 406
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	7 cut(s)	33, 251, 287, 392, 427, 436, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 433
HpyF3I	CTNAG	3 cut(s)	27, 119, 489
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	520, 570
Kpn2I	TCCGGA	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	53, 473, 519
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	279, 384
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	137, 545
MalI	GATC	3 cut(s)	55, 475, 521
MboI	GATC	3 cut(s)	53, 473, 519
MfeI	CAATTG	2 cut(s)	7, 428
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	4 cut(s)	7, 362, 428, 500
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	102, 174
MnlI	CCTC	2 cut(s)	55, 309
MroI	TCCGGA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	565
MspI	CCGG	1 cut(s)	90
MunI	CAATTG	2 cut(s)	7, 428
MwoI	GCNNNNNNNGC	2 cut(s)	389, 433
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	53, 473, 519
NlaIII	CATG	2 cut(s)	520, 570
NlaIV	GGNNCC	2 cut(s)	495, 541
NmuCI	GTSAC	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	391, 580
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	495, 541
PspPI	GGNCC	2 cut(s)	12, 539
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	565
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	2 cut(s)	390, 579
Sau3AI	GATC	3 cut(s)	53, 473, 519
Sau96I	GGNCC	2 cut(s)	12, 539
SchI	GAGTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	12, 539
SlaI	CTCGAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	7, 362, 428, 500
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	2 cut(s)	279, 384
SstI	GAGCTC	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	96, 106, 209
TasI	AATT	4 cut(s)	7, 362, 428, 500
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	12, 539
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	105
XspI	CTAG	2 cut(s)	279, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.