Rh6BG163300

N-terminal C2 in EEIG1 and EHBP1 proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013759
Physical Location & Seq
Forward (+)
26541448 .. 26549728
8281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG163300.1

Sequence Viewer

Length: 1047 bp
ATGGTATCTGTGATCCCTGGCGATGTGGGAAAGCCAACTGTGAAATTAGATAAAGTTGTGGTTCGAGATGGGAGCTGTAGATGGGAAAATCCGGTTTATGAAACTGTTAAATTCGAAAATCCGGTTTATGAAACTGTTAAATTCGACCAGGAGCCAAGAACTGGGAAGATTAAGGACAGACTTTATAGTCTGATTCTTTCAACTGGATCTTCTAAAGCAAGTGTTCTTGGCGAGGTTTCTGGTGATTTGGCCGAGTATTCTGAGGCTACTAAATCTTCCTTTGTGTCTCTTCCTCTTAAGAATTCAAGTACATTATTGCATGTTTCGATTGAAAAGTTACATGTAAATTCTGATCAGAGAGAGGTAGAAGGCTGTGAAGATGCCAAAGTTAAATCTCAGGATAATAGCTTGAAAAGACACTTGAGCAATAATGATGCAGATGAAAGCGTTTTAGTTGATGAGACGATCAATAAGACCACTCAAAATGTTGAGTTCAACCACTCGGCCTCTATTGGATCAGACATTACATTGTCCAGTTCCGACAGCAGCTCTGGACTCGATACTTCTCGAGAGCTTGTACTGCGAAACATTATCTATTGTCACGACTCTTCCAACTATCTGTCATCACCAAATCAGCCCTCAATACCACACAGACCTGGTGTTTATGGCTCGACAAATAATGAGCAACAGCAATCACAGCAATCACAGTGGGAGTGGTCTGCAGATTCTGAACATGGATTCGCGCTTCTTTTGCCTGACGATGGTGTTCTCAAACTCTCGGACGTTGGAGACCACACGGCGGAGATGGCTTTCCGACCCGATTCTGAAAGATCGCTTGATCTTCCACATCGAGCGCATGGAACTGAACCTGTCGCCGCTGATCTGGACCTCATCGTCGAACGCCATCGCGAATTTAGCTTGAGGCAGAGAAGGAAGGAGATACTCCGAGTCATACCCGAACCCTACCTGGCAAATGTTGTCGAAGGCGAACCGCAGGAGAATGTCTTGGAAATCGAGAACGGTTCGATCGCTGGAAGATTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
NT-C2

Protein Analysis

348

Amino Acids

38.57

Weight (kDa)

4.97

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT-C2 PF10358 9 - 118 1.2e-08 N-terminal C2 in EEIG1 and EHBP1 proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 186, 893
AccB7I CCANNNNNTGG 1 cut(s) 161
AccII CGCG 2 cut(s) 743, 909
AciI CCGC 3 cut(s) 800, 876, 992
AclWI GGATC 3 cut(s) 7, 214, 523
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 5 cut(s) 110, 140, 301, 346, 911
AfaI GTAC 2 cut(s) 310, 579
AfiI CCNNNNNNNGG 3 cut(s) 161, 761, 799
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 5 cut(s) 201, 306, 332, 412, 496
AjnI CCWGG 4 cut(s) 16, 147, 655, 966
AluBI AGCT 5 cut(s) 75, 408, 549, 574, 918
AluI AGCT 5 cut(s) 75, 408, 549, 574, 918
Alw26I GTCTC 3 cut(s) 291, 455, 783
AlwI GGATC 3 cut(s) 7, 214, 523
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 249, 504
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 5 cut(s) 110, 140, 301, 346, 911
AspLEI GCGC 2 cut(s) 745, 856
AspS9I GGNCC 1 cut(s) 886
AsuHPI GGTGA 2 cut(s) 254, 618
AsuII TTCGAA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 1 cut(s) 886
BbvI GCAGC 1 cut(s) 558
BccI CCATC 5 cut(s) 62, 75, 755, 799, 912
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 4 cut(s) 18, 149, 657, 968
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 3 cut(s) 291, 455, 783
BfmI CTRYAG 2 cut(s) 76, 720
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 2 cut(s) 547, 876
BlsI GCNGC 2 cut(s) 548, 877
Bme1390I CCNGG 4 cut(s) 18, 149, 657, 968
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 886
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 4 cut(s) 18, 149, 657, 968
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 370, 424
BmuI ACTGGG 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 442, 940
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 1 cut(s) 16
BsaWI WCCGGW 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 761, 799
Bse1I ACTGG 3 cut(s) 166, 208, 534
BseBI CCWGG 4 cut(s) 18, 149, 657, 968
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 161, 761, 799
BseMII CTCAG 2 cut(s) 252, 410
BseNI ACTGG 3 cut(s) 166, 208, 534
BseXI GCAGC 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 743, 909
Bsh1285I CGRYCG 1 cut(s) 1029
BshFI GGCC 2 cut(s) 251, 506
BsiEI CGRYCG 1 cut(s) 1029
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 2 cut(s) 92, 122
BslI CCNNNNNNNGG 3 cut(s) 161, 761, 799
BsmAI GTCTC 3 cut(s) 291, 455, 783
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 2 cut(s) 251, 506
Bso31I GGTCTC 1 cut(s) 783
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
Bsp68I TCGCGA 1 cut(s) 909
BspACI CCGC 3 cut(s) 800, 876, 992
BspANI GGCC 2 cut(s) 251, 506
BspCNI CTCAG 2 cut(s) 253, 409
BspFNI CGCG 2 cut(s) 743, 909
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 3 cut(s) 7, 214, 523
BspT104I TTCGAA 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 783
BsrI ACTGG 3 cut(s) 166, 208, 534
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
Bst2UI CCWGG 4 cut(s) 18, 149, 657, 968
Bst4CI ACNGT 5 cut(s) 40, 106, 136, 708, 1022
Bst6I CTCTTC 2 cut(s) 294, 613
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 261, 396
BstFNI CGCG 2 cut(s) 743, 909
BstHHI GCGC 2 cut(s) 745, 856
BstKTI GATC 9 cut(s) 15, 209, 355, 468, 518, 833, 841, 883, 1029
BstMAI GTCTC 3 cut(s) 291, 455, 783
BstMBI GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
BstMCI CGRYCG 1 cut(s) 1029
BstMWI GCNNNNNNNGC 5 cut(s) 580, 697, 751, 806, 915
BstNI CCWGG 4 cut(s) 18, 149, 657, 968
BstNSI RCATGY 2 cut(s) 323, 344
BstSCI CCNGG 4 cut(s) 16, 147, 655, 966
BstSFI CTRYAG 2 cut(s) 76, 720
BstUI CGCG 2 cut(s) 743, 909
BstV1I GCAGC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 2 cut(s) 251, 506
BtgZI GCGATG 2 cut(s) 36, 890
BtsIMutI CAGTG 1 cut(s) 713
BtuMI TCGCGA 1 cut(s) 909
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 2 cut(s) 745, 856
Cfr13I GGNCC 1 cut(s) 886
CsiI ACCWGGT 1 cut(s) 655
Csp6I GTAC 2 cut(s) 309, 578
CspCI CAANNNNNGTGG 2 cut(s) 689, 724
CviAII CATG 4 cut(s) 320, 341, 734, 857
CviQI GTAC 2 cut(s) 309, 578
DdeI CTNAG 2 cut(s) 261, 396
DpnI GATC 9 cut(s) 14, 208, 354, 467, 517, 832, 840, 882, 1028
DpnII GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
DrdI GACNNNNNNGTC 2 cut(s) 186, 893
DseDI GACNNNNNNGTC 2 cut(s) 186, 893
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 294, 613
EarI CTCTTC 2 cut(s) 294, 613
EciI GGCGGA 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 886
Eco88I CYCGRG 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 4 cut(s) 16, 147, 655, 966
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 4 cut(s) 323, 344, 737, 860
FaiI YATR 9 cut(s) 99, 129, 186, 321, 342, 666, 735, 858, 953
FatI CATG 4 cut(s) 319, 340, 733, 856
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 547, 876
Fsp4HI GCNGC 2 cut(s) 547, 876
GlaI GCGC 2 cut(s) 744, 855
GluI GCNGC 2 cut(s) 547, 876
HaeIII GGCC 2 cut(s) 251, 506
HapII CCGG 2 cut(s) 92, 122
HhaI GCGC 2 cut(s) 745, 856
Hin1II CATG 4 cut(s) 323, 344, 737, 860
Hin6I GCGC 2 cut(s) 743, 854
HinP1I GCGC 2 cut(s) 743, 854
HinfI GANTC 7 cut(s) 193, 555, 605, 725, 738, 821, 948
HpaII CCGG 2 cut(s) 92, 122
HphI GGTGA 2 cut(s) 254, 618
Hpy188III TCNNGA 9 cut(s) 65, 398, 552, 567, 569, 602, 884, 908, 1015
Hpy99I CGWCG 1 cut(s) 899
HpyAV CCTTC 4 cut(s) 362, 924, 928, 977
HpyCH4III ACNGT 5 cut(s) 40, 106, 136, 708, 1022
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 3 cut(s) 319, 437, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 580, 697, 751, 806, 915
HpyF3I CTNAG 2 cut(s) 261, 396
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 4 cut(s) 323, 344, 737, 860
HspAI GCGC 2 cut(s) 743, 854
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
LmnI GCTCC 2 cut(s) 72, 151
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 2 cut(s) 370, 424
MabI ACCWGGT 1 cut(s) 655
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 2 cut(s) 336, 599
MalI GATC 9 cut(s) 14, 208, 354, 467, 517, 832, 840, 882, 1028
MboI GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
MboII GAAGA 8 cut(s) 178, 201, 267, 281, 389, 600, 833, 1047
MflI RGATCY 1 cut(s) 206
MluCI AATT 6 cut(s) 44, 110, 140, 301, 346, 911
MlyI GAGTC 3 cut(s) 549, 599, 957
MmeI TCCRAC 4 cut(s) 564, 636, 766, 838
MnlI CCTC 8 cut(s) 226, 256, 303, 355, 517, 649, 899, 915
MseI TTAA 5 cut(s) 108, 138, 171, 297, 390
MspA1I CMGCKG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 92, 122
MspR9I CCNGG 4 cut(s) 18, 149, 657, 968
MvaI CCWGG 4 cut(s) 18, 149, 657, 968
MvnI CGCG 2 cut(s) 743, 909
MwoI GCNNNNNNNGC 5 cut(s) 580, 697, 751, 806, 915
NdeII GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
NlaIII CATG 4 cut(s) 323, 344, 737, 860
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 2 cut(s) 277, 482
NmuCI GTSAC 1 cut(s) 599
NruI TCGCGA 1 cut(s) 909
NspI RCATGY 2 cut(s) 323, 344
NspV TTCGAA 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 567
PciI ACATGT 1 cut(s) 340
PfeI GAWTC 4 cut(s) 193, 725, 738, 821
PflMI CCANNNNNTGG 1 cut(s) 161
PkrI GCNGC 2 cut(s) 548, 877
Ple19I CGATCG 1 cut(s) 1029
PleI GAGTC 3 cut(s) 549, 599, 956
PpsI GAGTC 3 cut(s) 549, 599, 956
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 4 cut(s) 16, 147, 655, 966
PspGI CCWGG 4 cut(s) 16, 147, 655, 966
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 886
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 206
PvuI CGATCG 1 cut(s) 1029
RruI TCGCGA 1 cut(s) 909
RsaI GTAC 2 cut(s) 310, 579
RsaNI GTAC 2 cut(s) 309, 578
SaqAI TTAA 5 cut(s) 108, 138, 171, 297, 390
SatI GCNGC 2 cut(s) 547, 876
Sau3AI GATC 9 cut(s) 12, 206, 352, 465, 515, 830, 838, 880, 1026
Sau96I GGNCC 1 cut(s) 886
SchI GAGTC 3 cut(s) 549, 599, 957
ScrFI CCNGG 4 cut(s) 18, 149, 657, 968
SexAI ACCWGGT 1 cut(s) 655
SfaNI GCATC 2 cut(s) 370, 424
SfcI CTRYAG 2 cut(s) 76, 720
Sfr274I CTCGAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 886
SlaI CTCGAG 1 cut(s) 567
SmlI CTYRAG 4 cut(s) 296, 421, 567, 919
SmoI CTYRAG 4 cut(s) 296, 421, 567, 919
Sse9I AATT 6 cut(s) 44, 110, 140, 301, 346, 911
SsiI CCGC 3 cut(s) 800, 876, 992
StyD4I CCNGG 4 cut(s) 16, 147, 655, 966
TaaI ACNGT 5 cut(s) 40, 106, 136, 708, 1022
TaiI ACGT 1 cut(s) 786
TasI AATT 6 cut(s) 44, 110, 140, 301, 346, 911
TatI WGTACW 2 cut(s) 308, 577
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 4 cut(s) 193, 725, 738, 821
Tru1I TTAA 5 cut(s) 108, 138, 171, 297, 390
Tru9I TTAA 5 cut(s) 108, 138, 171, 297, 390
TscAI CASTG 1 cut(s) 713
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 3 cut(s) 114, 144, 456
TspRI CASTG 1 cut(s) 713
Van91I CCANNNNNTGG 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 5 cut(s) 110, 140, 301, 346, 911
XceI RCATGY 2 cut(s) 323, 344
XhoI CTCGAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.