RLG00000034196

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013759
Physical Location & Seq
Forward (+)
38190685 .. 38191306
622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034196

Sequence Viewer

Length: 489 bp
ATGGCATTTGCAAGCTCAAGCCCAACGCCAAATGTGGATGAGCTCAAAGCCATTTCAGAGCTCAAACGCAGCTTCTTGAAGAAAGAGCTCTATCTCTCGCCGCAAGTGACCCTAATGCTGGCAGAGATTCAAGAACAACAGGGCCTAATGAAGACATACAAGATCACGATCAAGGAGCCCGAAGCTCACTGCAAAGGCTTAGGCATTTCCAAACTCAAATCCGAACTCAAAGAGAAAGAGTCGAAAGTGGAGATTGATTTGAATGACGATGATGAGGAAGAAGAGGAAGAGGATGGTAGTGGGGATGTGAAAATGGATGATGTTCAGGGAGGAATTGCGTACTATTCCTCTCTATCTCTCTCTCTCTCTCACAAACCCATAAACCTCCCAACCTCGACAACACCCAGTATATTCTTCAAGCTCTTGTCTTTCATTGATGGTAAGGATTTTGGGTGCATGTTGATGATGCAAGAATTTTCTTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

163

Amino Acids

18.17

Weight (kDa)

4.66

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 12 - 82 1.1e-10 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 473
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 5 cut(s) 79, 131, 262, 418, 485
AluBI AGCT 7 cut(s) 15, 43, 61, 72, 88, 185, 421
AluI AGCT 7 cut(s) 15, 43, 61, 72, 88, 185, 421
Alw21I GWGCWC 3 cut(s) 45, 63, 90
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 142
BanII GRGCYC 4 cut(s) 45, 63, 90, 180
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 3 cut(s) 45, 63, 90
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 287, 431
BisI GCNGC 2 cut(s) 70, 101
BlsI GCNGC 2 cut(s) 71, 102
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 167
BseGI GGATG 4 cut(s) 43, 298, 310, 322
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 45, 63, 90
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 4 cut(s) 45, 63, 90, 180
Bsp143I GATC 2 cut(s) 162, 168
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 405
BssMI GATC 2 cut(s) 162, 168
Bst6I CTCTTC 2 cut(s) 276, 282
BstC8I GCNNGC 2 cut(s) 13, 120
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 4 cut(s) 43, 298, 310, 322
BstKTI GATC 2 cut(s) 165, 171
BstMBI GATC 2 cut(s) 162, 168
BstNSI RCATGY 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 4 cut(s) 43, 298, 310, 322
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 13, 120
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 340
CviAII CATG 1 cut(s) 457
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 199
DpnI GATC 2 cut(s) 164, 170
DpnII GATC 2 cut(s) 162, 168
Eam1104I CTCTTC 2 cut(s) 276, 282
EarI CTCTTC 2 cut(s) 276, 282
Ecl136II GAGCTC 3 cut(s) 43, 61, 88
Eco24I GRGCYC 4 cut(s) 45, 63, 90, 180
Eco53kI GAGCTC 3 cut(s) 43, 61, 88
EcoICRI GAGCTC 3 cut(s) 43, 61, 88
EcoO109I RGGNCCY 1 cut(s) 142
EcoT38I GRGCYC 4 cut(s) 45, 63, 90, 180
FaeI CATG 1 cut(s) 460
FaiI YATR 4 cut(s) 157, 380, 410, 458
FatI CATG 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 70, 101
FokI GGATG 4 cut(s) 50, 305, 317, 329
FriOI GRGCYC 4 cut(s) 45, 63, 90, 180
Fsp4HI GCNGC 2 cut(s) 70, 101
GluI GCNGC 2 cut(s) 70, 101
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 460
HinfI GANTC 2 cut(s) 127, 239
Hpy188I TCNGA 2 cut(s) 58, 223
Hpy188III TCNNGA 3 cut(s) 76, 131, 166
HpyCH4V TGCA 4 cut(s) 11, 192, 456, 469
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 1 cut(s) 460
Kzo9I GATC 2 cut(s) 162, 168
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 104, 125, 311, 418
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 164, 170
MboI GATC 2 cut(s) 162, 168
MboII GAAGA 6 cut(s) 91, 163, 290, 293, 299, 406
MhlI GDGCHC 4 cut(s) 45, 63, 90, 180
MluCI AATT 2 cut(s) 333, 473
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 7 cut(s) 268, 277, 283, 323, 358, 395, 403
MslI CAYNNNNRTG 1 cut(s) 461
NdeII GATC 2 cut(s) 162, 168
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 460
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 71, 102
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp124BI GAGCTC 3 cut(s) 45, 63, 90
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 461
SacI GAGCTC 3 cut(s) 45, 63, 90
SatI GCNGC 2 cut(s) 70, 101
Sau3AI GATC 2 cut(s) 162, 168
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 4 cut(s) 45, 63, 90, 180
SetI ASST 9 cut(s) 17, 45, 63, 74, 90, 187, 387, 395, 423
SfaNI GCATC 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 333, 473
SsiI CCGC 1 cut(s) 101
SstI GAGCTC 3 cut(s) 45, 63, 90
TaqI TCGA 2 cut(s) 242, 395
TasI AATT 2 cut(s) 333, 473
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 164, 421
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.