Rh6AG255600

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013759
Physical Location & Seq
Reverse (-)
44576060 .. 44576718
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG255600.1

Sequence Viewer

Length: 459 bp
ATGGCCTCTGTAGCTTTCTTCACTCCACCGTCTCTGAAACTGGTCACCGGAAATGGGTCTTCTCAGAATCAGAGTTCTTGCTCGGAATTCTCAAATGGGTACCCTTCCTTTTCTTCTTCTTGTAAACTATTTAAAGCTGATCAGAAGCTCCAATCCAGCGGAGCAAGCTGGTCAGGACTATCCACAAGGTCATCAGCCTCCGAGTCGCAACCCAAATCGCTTCCAACAATGGCAATTGAAAGCTCAAGCCCAAGGCCAAACGTGGACGAGCTGAAAGCCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTTGCCGCAATTGACCCTAATGCTGGCGGAGATTCAAGAACAACAGGGCCTAATGGAGACATACGAGATCACGATCAAGGAGCCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

152

Amino Acids

16.48

Weight (kDa)

5.88

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 88 - 152 1.1e-07 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 4 cut(s) 159, 329, 350, 418
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 54, 346
AgsI TTSAA 3 cut(s) 239, 307, 359
Alw21I GWGCWC 2 cut(s) 291, 318
Alw26I GTCTC 2 cut(s) 36, 374
AoxI GGCC 3 cut(s) 3, 254, 370
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 37, 407
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 3 cut(s) 291, 318, 408
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 291, 318
BbvI GCAGC 1 cut(s) 309
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 36, 374
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 298, 329
BlsI GCNGC 2 cut(s) 299, 330
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 101, 405
BpiI GAAGAC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 346
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 54, 346
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 3 cut(s) 5, 256, 372
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 291, 318
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 54, 346
BsmAI GTCTC 2 cut(s) 36, 374
BsmBI CGTCTC 1 cut(s) 36
BsnI GGCC 3 cut(s) 5, 256, 372
Bsp1286I GDGCHC 3 cut(s) 291, 318, 408
Bsp143I GATC 4 cut(s) 139, 319, 390, 396
BspACI CCGC 4 cut(s) 159, 329, 350, 418
BspANI GGCC 3 cut(s) 5, 256, 372
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 101, 405
BspT107I GGYRCC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 4 cut(s) 139, 319, 390, 396
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 166, 348
BstDEI CTNAG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 43
BstKTI GATC 4 cut(s) 142, 322, 393, 399
BstMAI GTCTC 2 cut(s) 36, 374
BstMBI GATC 4 cut(s) 139, 319, 390, 396
BstMWI GCNNNNNNNGC 2 cut(s) 11, 165
BstPI GGTNACC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 3 cut(s) 5, 256, 372
Cac8I GCNNGC 2 cut(s) 166, 348
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 100
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 141, 321, 392, 398
DpnII GATC 4 cut(s) 139, 319, 390, 396
DraI TTTAAA 1 cut(s) 133
EciI GGCGGA 1 cut(s) 365
Ecl136II GAGCTC 2 cut(s) 289, 316
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 3 cut(s) 291, 318, 408
Eco53kI GAGCTC 2 cut(s) 289, 316
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 2 cut(s) 289, 316
EcoO109I RGGNCCY 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 3 cut(s) 291, 318, 408
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 36
FaiI YATR 1 cut(s) 385
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 298, 329
FriOI GRGCYC 3 cut(s) 291, 318, 408
Fsp4HI GCNGC 2 cut(s) 298, 329
GluI GCNGC 2 cut(s) 298, 329
HaeIII GGCC 3 cut(s) 5, 256, 372
HapII CCGG 1 cut(s) 48
HinfI GANTC 3 cut(s) 67, 203, 355
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 37, 407
Hpy166II GTNNAC 2 cut(s) 125, 265
Hpy188I TCNGA 7 cut(s) 36, 66, 72, 85, 144, 202, 451
Hpy188III TCNNGA 4 cut(s) 174, 304, 359, 394
Hpy8I GTNNAC 2 cut(s) 125, 265
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 165
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 261
KpnI GGTACC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 139, 319, 390, 396
LmnI GCTCC 3 cut(s) 153, 161, 403
LpnPI CCDG 7 cut(s) 26, 61, 154, 159, 169, 332, 353
Lsp1109I GCAGC 1 cut(s) 309
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 43
MalI GATC 4 cut(s) 141, 321, 392, 398
MboI GATC 4 cut(s) 139, 319, 390, 396
MboII GAAGA 5 cut(s) 10, 51, 105, 108, 319
MfeI CAATTG 2 cut(s) 234, 332
MhlI GDGCHC 3 cut(s) 291, 318, 408
MluCI AATT 3 cut(s) 86, 234, 332
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 2 cut(s) 16, 208
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 48
MunI CAATTG 2 cut(s) 234, 332
MwoI GCNNNNNNNGC 2 cut(s) 11, 165
NdeII GATC 4 cut(s) 139, 319, 390, 396
NlaIV GGNNCC 2 cut(s) 101, 405
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 67, 355
PkrI GCNGC 2 cut(s) 299, 330
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 2 cut(s) 291, 318
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 101, 405
PspPI GGNCC 1 cut(s) 370
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 2 cut(s) 291, 318
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 298, 329
Sau3AI GATC 4 cut(s) 139, 319, 390, 396
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 3 cut(s) 291, 318, 408
SfcI CTRYAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 86, 234, 332
SsiI CCGC 4 cut(s) 159, 329, 350, 418
SstI GAGCTC 2 cut(s) 291, 318
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 86, 234, 332
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 67, 355
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 1 cut(s) 43
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.