RLG00000035437

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013759
Physical Location & Seq
Reverse (-)
66952434 .. 66953515
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035437

Sequence Viewer

Length: 537 bp
ATGGCCTCTGTAGCTTTCTTCACTCCACCGGCTCTGAAACTGGTCACCGGAAATGGGTCTTCTCAGAATCAGAGTTCTTGCTTGGAATTCTCAAATGGGTCATCAGCCTCCGAGTCGCAACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAGCCCAACGTCGAACGTGGACGAGCTGAAAGCCATTTTGGAGCTCAAATGCAACTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAATTGACCCTAATGCTGGCGGAGATTCAAGAACAACAGGGCCTAATGAAGACATACGAGATCACAATCAAGGAGCCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCCAAGAGGATTTGGTTTCAGTGAAGCAAGAGTCGAAAGTGGAGATTGATTTGAATGAAAATGATGAGGAAGAGGATGGTAGTGGGGATGTGAAAATGGATGATGTTCAGGGAGGAATTAATTATGGGTGTTTGTATTTGAATATGATTAGAATGTATAGCAATTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

179

Amino Acids

19.48

Weight (kDa)

4.49

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 58 - 130 1.8e-09 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 239, 260, 328
AcsI RAATTY 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 54, 256
AgsI TTSAA 4 cut(s) 217, 269, 418, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 6 cut(s) 14, 153, 181, 199, 226, 323
AluI AGCT 6 cut(s) 14, 153, 181, 199, 226, 323
Alw21I GWGCWC 2 cut(s) 201, 228
AoxI GGCC 2 cut(s) 3, 280
ApoI RAATTY 1 cut(s) 86
AseI ATTAAT 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 37, 317
BanII GRGCYC 3 cut(s) 201, 228, 318
BbsI GAAGAC 2 cut(s) 51, 296
Bbv12I GWGCWC 2 cut(s) 201, 228
BccI CCATC 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 315
BpiI GAAGAC 2 cut(s) 51, 296
BpuEI CTTGAG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 256
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 305
BseGI GGATG 3 cut(s) 445, 457, 469
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 54, 256
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 2 cut(s) 5, 282
BsiHKAI GWGCWC 2 cut(s) 201, 228
BsiSI CCGG 2 cut(s) 29, 48
BslI CCNNNNNNNGG 2 cut(s) 54, 256
BsnI GGCC 2 cut(s) 5, 282
Bsp1286I GDGCHC 3 cut(s) 201, 228, 318
Bsp143I GATC 2 cut(s) 229, 300
BspACI CCGC 3 cut(s) 239, 260, 328
BspANI GGCC 2 cut(s) 5, 282
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 2 cut(s) 229, 300
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 151, 258
BstDEI CTNAG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 3 cut(s) 445, 457, 469
BstKTI GATC 2 cut(s) 232, 303
BstMBI GATC 2 cut(s) 229, 300
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 9
BstV2I GAAGAC 2 cut(s) 51, 296
BsuRI GGCC 2 cut(s) 5, 282
BtsCI GGATG 3 cut(s) 445, 457, 469
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 151, 258
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 231, 302
DpnII GATC 2 cut(s) 229, 300
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 2 cut(s) 199, 226
Eco24I GRGCYC 3 cut(s) 201, 228, 318
Eco53kI GAGCTC 2 cut(s) 199, 226
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 2 cut(s) 199, 226
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 3 cut(s) 201, 228, 318
FaiI YATR 4 cut(s) 295, 489, 509, 522
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 3 cut(s) 452, 464, 476
FriOI GRGCYC 3 cut(s) 201, 228, 318
Fsp4HI GCNGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 2 cut(s) 5, 282
HapII CCGG 2 cut(s) 29, 48
HinfI GANTC 4 cut(s) 67, 113, 265, 395
HpaII CCGG 2 cut(s) 29, 48
HphI GGTGA 2 cut(s) 37, 317
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 5 cut(s) 36, 66, 72, 112, 361
Hpy188III TCNNGA 2 cut(s) 214, 269
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 164, 171
HpyCH4V TGCA 2 cut(s) 149, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 164, 171
Kzo9I GATC 2 cut(s) 229, 300
LmnI GCTCC 2 cut(s) 196, 313
LpnPI CCDG 6 cut(s) 26, 42, 61, 242, 263, 458
MaeII ACGT 2 cut(s) 164, 171
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 231, 302
MboI GATC 2 cut(s) 229, 300
MboII GAAGA 5 cut(s) 10, 51, 229, 301, 446
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 201, 228, 318
MluCI AATT 5 cut(s) 86, 242, 480, 484, 526
MlyI GAGTC 2 cut(s) 122, 404
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 6 cut(s) 16, 118, 364, 424, 430, 470
MseI TTAA 1 cut(s) 483
MspI CCGG 2 cut(s) 29, 48
MunI CAATTG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 229, 300
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 67, 265
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 2 cut(s) 121, 403
PpsI GAGTC 2 cut(s) 121, 403
PshBI ATTAAT 1 cut(s) 483
Psp124BI GAGCTC 2 cut(s) 201, 228
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 280
SacI GAGCTC 2 cut(s) 201, 228
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 229, 300
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 2 cut(s) 122, 404
SduI GDGCHC 3 cut(s) 201, 228, 318
SetI ASST 9 cut(s) 16, 155, 167, 174, 183, 201, 228, 325, 337
SfcI CTRYAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 5 cut(s) 86, 242, 480, 484, 526
SsiI CCGC 3 cut(s) 239, 260, 328
SstI GAGCTC 2 cut(s) 201, 228
TaiI ACGT 2 cut(s) 167, 174
TaqI TCGA 3 cut(s) 167, 228, 398
TasI AATT 5 cut(s) 86, 242, 480, 484, 526
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 2 cut(s) 67, 265
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 302, 435
TspRI CASTG 1 cut(s) 390
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.