Rh2CG214800

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013759
Physical Location & Seq
Reverse (-)
21117955 .. 21118514
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG214800.1

Sequence Viewer

Length: 477 bp
ATGGCCTCTGTAGCTTTCTTCACTCCACCGGCTCTGAAACTGGTCACCGGAAATGGGTCTTCTCAGAATCAGAGTTCTTGCTCGGAATTCTCAAATGGGTACCCTTCCTTTTCTTCTTCTTGTAAACTATTTAAGACTGATCAGAAGCTCCGATCCAGCGGAGCAAGCTGGTCAGGACTATCCATAAGGTCATCAGCCTCCGAGTCGCTACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAGCCCAATGCCAAACGTGGACGAGCTGAAAGCCATTTTAGAGCTCAAATGCAGCTTCTTGAAGAAAGAGCTCGATCTCTCGCCGCAATTGACCCTAATGCTGGCGGAGATTCAAGAACAACATGGCCTAATGAAGACATACGAGATCACGATCAAGGAGCCCGAAGCTCACCGCAAAGGTTTAGGCATTTCCACACTCAAATCCGAACTCCAAGAGGTACCTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

158

Amino Acids

17.11

Weight (kDa)

7.69

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 88 - 155 8.9e-09 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 99, 463
AccB1I GGYRCC 2 cut(s) 99, 463
AciI CCGC 4 cut(s) 159, 329, 350, 418
AclWI GGATC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 2 cut(s) 101, 465
AfiI CCNNNNNNNGG 2 cut(s) 54, 346
AgsI TTSAA 2 cut(s) 307, 359
AluBI AGCT 9 cut(s) 14, 148, 168, 243, 271, 289, 300, 316, 413
AluI AGCT 9 cut(s) 14, 148, 168, 243, 271, 289, 300, 316, 413
Alw21I GWGCWC 2 cut(s) 291, 318
AlwI GGATC 1 cut(s) 147
AoxI GGCC 2 cut(s) 3, 370
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 86
Asp718I GGTACC 2 cut(s) 99, 463
AsuHPI GGTGA 2 cut(s) 37, 407
BanI GGYRCC 2 cut(s) 99, 463
BanII GRGCYC 3 cut(s) 291, 318, 408
BbsI GAAGAC 2 cut(s) 51, 386
Bbv12I GWGCWC 2 cut(s) 291, 318
BbvI GCAGC 1 cut(s) 309
BclI TGATCA 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 298, 329
BlsI GCNGC 2 cut(s) 299, 330
BmiI GGNNCC 3 cut(s) 101, 405, 465
BpiI GAAGAC 2 cut(s) 51, 386
BpuEI CTTGAG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 346
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 54, 346
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 2 cut(s) 5, 372
BshNI GGYRCC 2 cut(s) 99, 463
BsiHKAI GWGCWC 2 cut(s) 291, 318
BsiSI CCGG 2 cut(s) 29, 48
BslI CCNNNNNNNGG 2 cut(s) 54, 346
BsnI GGCC 2 cut(s) 5, 372
Bsp1286I GDGCHC 3 cut(s) 291, 318, 408
Bsp143I GATC 5 cut(s) 139, 152, 319, 390, 396
BspACI CCGC 4 cut(s) 159, 329, 350, 418
BspANI GGCC 2 cut(s) 5, 372
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 473
BspLI GGNNCC 3 cut(s) 101, 405, 465
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 2 cut(s) 99, 463
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 5 cut(s) 139, 152, 319, 390, 396
BstC8I GCNNGC 3 cut(s) 166, 241, 348
BstDEI CTNAG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 43
BstKTI GATC 5 cut(s) 142, 155, 322, 393, 399
BstMBI GATC 5 cut(s) 139, 152, 319, 390, 396
BstMWI GCNNNNNNNGC 2 cut(s) 11, 165
BstPI GGTNACC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 2 cut(s) 51, 386
BsuRI GGCC 2 cut(s) 5, 372
Cac8I GCNNGC 3 cut(s) 166, 241, 348
CciI TCATGA 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 28
Csp6I GTAC 2 cut(s) 100, 464
CviAII CATG 2 cut(s) 368, 474
CviQI GTAC 2 cut(s) 100, 464
DdeI CTNAG 1 cut(s) 63
DpnI GATC 5 cut(s) 141, 154, 321, 392, 398
DpnII GATC 5 cut(s) 139, 152, 319, 390, 396
EciI GGCGGA 1 cut(s) 365
Ecl136II GAGCTC 2 cut(s) 289, 316
Eco24I GRGCYC 3 cut(s) 291, 318, 408
Eco53kI GAGCTC 2 cut(s) 289, 316
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 2 cut(s) 289, 316
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 3 cut(s) 291, 318, 408
FaeI CATG 2 cut(s) 371, 477
FaiI YATR 4 cut(s) 185, 369, 385, 475
FatI CATG 2 cut(s) 367, 473
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 298, 329
FriOI GRGCYC 3 cut(s) 291, 318, 408
Fsp4HI GCNGC 2 cut(s) 298, 329
GluI GCNGC 2 cut(s) 298, 329
HaeIII GGCC 2 cut(s) 5, 372
HapII CCGG 2 cut(s) 29, 48
Hin1II CATG 2 cut(s) 371, 477
HinfI GANTC 3 cut(s) 67, 203, 355
HpaII CCGG 2 cut(s) 29, 48
HphI GGTGA 2 cut(s) 37, 407
Hpy166II GTNNAC 2 cut(s) 125, 265
Hpy188I TCNGA 8 cut(s) 36, 66, 72, 85, 144, 152, 202, 451
Hpy188III TCNNGA 5 cut(s) 174, 304, 359, 394, 474
Hpy8I GTNNAC 2 cut(s) 125, 265
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 239, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 165
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 371, 477
KpnI GGTACC 2 cut(s) 103, 467
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 139, 152, 319, 390, 396
LmnI GCTCC 3 cut(s) 153, 161, 403
LpnPI CCDG 7 cut(s) 26, 42, 61, 154, 159, 169, 332
Lsp1109I GCAGC 1 cut(s) 309
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 141, 154, 321, 392, 398
MboI GATC 5 cut(s) 139, 152, 319, 390, 396
MboII GAAGA 6 cut(s) 10, 51, 105, 108, 319, 391
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 291, 318, 408
MluCI AATT 3 cut(s) 86, 332, 469
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 3 cut(s) 16, 208, 454
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 2 cut(s) 29, 48
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 11, 165
NdeII GATC 5 cut(s) 139, 152, 319, 390, 396
NlaIII CATG 2 cut(s) 371, 477
NlaIV GGNNCC 3 cut(s) 101, 405, 465
NmuCI GTSAC 1 cut(s) 43
PagI TCATGA 1 cut(s) 473
PfeI GAWTC 2 cut(s) 67, 355
PkrI GCNGC 2 cut(s) 299, 330
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 2 cut(s) 291, 318
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 101, 405, 465
RsaI GTAC 2 cut(s) 101, 465
RsaNI GTAC 2 cut(s) 100, 464
SacI GAGCTC 2 cut(s) 291, 318
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 298, 329
Sau3AI GATC 5 cut(s) 139, 152, 319, 390, 396
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 3 cut(s) 291, 318, 408
SfcI CTRYAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 86, 332, 469
SsiI CCGC 4 cut(s) 159, 329, 350, 418
SstI GAGCTC 2 cut(s) 291, 318
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 86, 332, 469
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 67, 355
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 392, 462
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.