Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Reverse (-)

58463743 .. 58464242

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCATCTCCGGCGACGCACCATCTTGTCTCCGCCGGCTTCCAATTGTTCGATTGCGCGTCTTCACCGGCGCACCATGGAATCGGCGTCGATGGCGGTCTTGCAGGACGCGCCGTACATGGAGGTCGGGACGATGGCGGGAGCGGTGGATCTGTCATTCAGCTCCTCCACGAATATCGAGATCTTCAAGCTCAAGTTAAAGTCAGACGATCGTGATCTTCATGTAGTGGGCGAGTCGACGAGCTCTGAGAGATTCAACAGGTTATCGTGGTTCAAGCTCGCTGCTAGATCAGGCTCTCAAGACTTTAGCCTTGGGCTCATCGCCGGTGCACTTGTCAATGAGACTATTGATATTTTGAATCCACTTACTCTAATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

127

Amino Acids

13.92

Weight (kDa)

9.03

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	236
AccII	CGCG	2 cut(s)	58, 110
AciI	CCGC	4 cut(s)	32, 95, 137, 143
AclWI	GGATC	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	187, 256, 274, 358
AluBI	AGCT	4 cut(s)	162, 190, 243, 277
AluI	AGCT	4 cut(s)	162, 190, 243, 277
Alw21I	GWGCWC	2 cut(s)	245, 331
Alw26I	GTCTC	2 cut(s)	33, 335
Alw44I	GTGCAC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	281
AspLEI	GCGC	3 cut(s)	58, 72, 112
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	2 cut(s)	245, 318
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	245, 331
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	29, 85, 127
BceAI	ACGGC	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	33, 335
BfaI	CTAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	176, 282
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	75, 310
BsaWI	WCCGGW	1 cut(s)	375
Bse118I	RCCGGY	3 cut(s)	34, 66, 323
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	75, 310
BseJI	GATNNNNATC	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	2 cut(s)	58, 110
Bsh1285I	CGRYCG	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	245, 331
BsiSI	CCGG	5 cut(s)	10, 35, 67, 324, 376
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	33, 335
BsmFI	GGGAC	1 cut(s)	142
Bsp1286I	GDGCHC	3 cut(s)	245, 318, 331
Bsp143I	GATC	5 cut(s)	148, 180, 208, 214, 287
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	32, 95, 137, 143
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	58, 110
BspPI	GGATC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	3 cut(s)	34, 66, 323
BssAI	RCCGGY	3 cut(s)	34, 66, 323
BssECI	CCNNGG	2 cut(s)	75, 310
BssMI	GATC	5 cut(s)	148, 180, 208, 214, 287
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	75, 310
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	36, 279
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	2 cut(s)	58, 110
BstHHI	GCGC	3 cut(s)	58, 72, 112
BstKTI	GATC	5 cut(s)	151, 183, 211, 217, 290
BstMAI	GTCTC	2 cut(s)	33, 335
BstMBI	GATC	5 cut(s)	148, 180, 208, 214, 287
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 92, 109
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	2 cut(s)	58, 110
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	148, 180
BstYI	RGATCY	2 cut(s)	148, 180
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	36, 279
CfoI	GCGC	3 cut(s)	58, 72, 112
Cfr10I	RCCGGY	3 cut(s)	34, 66, 323
CseI	GACGC	4 cut(s)	24, 47, 75, 116
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	76, 118, 221
CviJI	RGCY	8 cut(s)	38, 162, 190, 243, 277, 294, 309, 316
CviKI_1	RGCY	8 cut(s)	38, 162, 190, 243, 277, 294, 309, 316
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	5 cut(s)	150, 182, 210, 216, 289
DpnII	GATC	5 cut(s)	148, 180, 208, 214, 287
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	75, 310
Eco24I	GRGCYC	2 cut(s)	245, 318
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	75, 310
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	245, 318
ErhI	CCWWGG	2 cut(s)	75, 310
FaeI	CATG	3 cut(s)	79, 121, 224
FaiI	YATR	3 cut(s)	77, 119, 222
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	75, 117, 220
FauI	CCCGC	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	282
FriOI	GRGCYC	2 cut(s)	245, 318
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	3 cut(s)	57, 71, 111
GluI	GCNGC	1 cut(s)	282
HapII	CCGG	5 cut(s)	10, 35, 67, 324, 376
HgaI	GACGC	4 cut(s)	24, 47, 75, 116
HhaI	GCGC	3 cut(s)	58, 72, 112
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	79, 121, 224
Hin6I	GCGC	3 cut(s)	56, 70, 110
HinP1I	GCGC	3 cut(s)	56, 70, 110
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	4 cut(s)	80, 233, 252, 358
HpaII	CCGG	5 cut(s)	10, 35, 67, 324, 376
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	237, 329
Hpy188I	TCNGA	2 cut(s)	205, 247
Hpy188III	TCNNGA	4 cut(s)	127, 178, 212, 299
Hpy8I	GTNNAC	2 cut(s)	237, 329
Hpy99I	CGWCG	3 cut(s)	18, 91, 241
HpyCH4V	TGCA	3 cut(s)	4, 103, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 92, 109
HpyF3I	CTNAG	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	79, 121, 224
HspAI	GCGC	3 cut(s)	56, 70, 110
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	148, 180, 208, 214, 287
LmnI	GCTCC	2 cut(s)	140, 167
LpnPI	CCDG	7 cut(s)	23, 48, 80, 89, 244, 276, 337
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	285
MalI	GATC	5 cut(s)	150, 182, 210, 216, 289
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	5 cut(s)	148, 180, 208, 214, 287
MboII	GAAGA	3 cut(s)	53, 175, 209
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	2 cut(s)	148, 180
MhlI	GDGCHC	3 cut(s)	245, 318, 331
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	115, 175
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	1 cut(s)	197
MspI	CCGG	5 cut(s)	10, 35, 67, 324, 376
MunI	CAATTG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	58, 110
MwoI	GCNNNNNNNGC	3 cut(s)	10, 92, 109
NaeI	GCCGGC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	5 cut(s)	148, 180, 208, 214, 287
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	79, 121, 224
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	80, 252, 358
PkrI	GCNGC	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	148, 180
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	5 cut(s)	148, 180, 208, 214, 287
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	3 cut(s)	245, 318, 331
SetI	ASST	6 cut(s)	126, 164, 192, 245, 263, 279
SfaNI	GCATC	1 cut(s)	13
SgrAI	CRCCGGYG	2 cut(s)	66, 323
SmlI	CTYRAG	2 cut(s)	191, 297
SmoI	CTYRAG	2 cut(s)	191, 297
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	4 cut(s)	32, 95, 137, 143
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	245
StyI	CCWWGG	2 cut(s)	75, 310
TaqI	TCGA	4 cut(s)	50, 89, 177, 236
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	80, 252, 358
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.