Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Forward (+)

37583614 .. 37600463

Gene Structure 16850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGTATGATTTGGGAGATCGTATCGGCGTCGATGGCGGTCTTGGCAGACGCGCCGTACATGGAGGTCGGGACGATGGCGGAGCGGTGGATCCGTCATTCGGCTCCTCCGCAAATATCAAGATCTTCAAGCTCAAGTTACGGTCGGACGATCGTGATCTTCATGTAGTGGGAGAGTCGACGAGCTCGAGAGATTCAACAAGGTTATCGTGGTTCAAGCTTCTCGCTAGATCGTGCTCTCAAGACTTTAGCCTTGGGCTCATCGCCGGTGCACTTGTCAATGAGACTATTGATATTTTGAATCCACTTACTCTAATCCGTATAGACTTTGAAAATCATGTGAATTTGGATATTGAAGCCTCCATTGACCAAAAGATCATTCAGCTAACCAAGAAATATGGAAATGAACCTTTACTAAGTGTTCATTCTCTCGAACAAGAGGATGCTCGACCTCCATTCGACCTCCATTCTCCCAAACGCGAGCTCCTCACAAACTCGAGCTTCTCCTCCTCGATTGAAGTCGCCACCATTGTTACCGTCCTCGGCTTATTCGTCATCGACTTGGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

190

Amino Acids

20.89

Weight (kDa)

5.2

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	2 cut(s)	54, 480
AciI	CCGC	4 cut(s)	39, 81, 86, 111
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	7 cut(s)	130, 198, 217, 301, 332, 356, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	6 cut(s)	133, 186, 220, 385, 484, 501
AluI	AGCT	6 cut(s)	133, 186, 220, 385, 484, 501
Alw21I	GWGCWC	4 cut(s)	188, 239, 274, 486
Alw26I	GTCTC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	86, 99
Ama87I	CYCGRG	2 cut(s)	187, 496
ApaLI	GTGCAC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	187, 496
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	91
BanII	GRGCYC	3 cut(s)	188, 261, 486
Bbv12I	GWGCWC	4 cut(s)	188, 239, 274, 486
BccI	CCATC	2 cut(s)	29, 71
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	228
BglII	AGATCT	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	565
BmeT110I	CYCGRG	2 cut(s)	187, 496
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	93, 106
BmsI	GCATC	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	119, 225
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	253, 541
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	253, 541
BseGI	GGATG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	97, 476, 496, 499
BseSI	GKGCMC	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	54, 480
Bsh1285I	CGRYCG	2 cut(s)	146, 154
BsiEI	CGRYCG	2 cut(s)	146, 154
BsiHKAI	GWGCWC	4 cut(s)	188, 239, 274, 486
BsiHKCI	CYCGRG	2 cut(s)	187, 496
BsiSI	CCGG	2 cut(s)	267, 568
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	86
BsoBI	CYCGRG	2 cut(s)	187, 496
Bsp1286I	GDGCHC	5 cut(s)	188, 239, 261, 274, 486
Bsp143I	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
BspACI	CCGC	4 cut(s)	39, 81, 86, 111
BspFNI	CGCG	2 cut(s)	54, 480
BspLI	GGNNCC	2 cut(s)	93, 106
BspPI	GGATC	2 cut(s)	86, 99
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	253, 541
BssMI	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	144, 538
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	2 cut(s)	54, 480
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	7 cut(s)	22, 94, 126, 154, 160, 233, 378
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
BstMCI	CGRYCG	2 cut(s)	146, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	2 cut(s)	54, 480
BstX2I	RGATCY	2 cut(s)	91, 123
BstYI	RGATCY	2 cut(s)	91, 123
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	482
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	2 cut(s)	19, 60
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	62, 164, 338
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	7 cut(s)	21, 93, 125, 153, 159, 232, 377
DpnII	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	186, 484
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	3 cut(s)	188, 261, 486
Eco47I	GGWCC	1 cut(s)	565
Eco53kI	GAGCTC	2 cut(s)	186, 484
Eco88I	CYCGRG	2 cut(s)	187, 496
EcoICRI	GAGCTC	2 cut(s)	186, 484
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	3 cut(s)	188, 261, 486
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	65, 167, 341
FaiI	YATR	6 cut(s)	9, 63, 165, 323, 339, 399
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	61, 163, 337
FblI	GTMKAC	1 cut(s)	179
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	3 cut(s)	188, 261, 486
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	55
HapII	CCGG	2 cut(s)	267, 568
HgaI	GACGC	2 cut(s)	19, 60
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	65, 167, 341
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	176, 194, 301
HpaII	CCGG	2 cut(s)	267, 568
Hpy166II	GTNNAC	2 cut(s)	180, 272
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	6 cut(s)	71, 121, 155, 189, 242, 431
Hpy8I	GTNNAC	2 cut(s)	180, 272
Hpy99I	CGWCG	2 cut(s)	35, 184
HpyCH4III	ACNGT	2 cut(s)	144, 538
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
HpyF3I	CTNAG	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	65, 167, 341
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
LmnI	GCTCC	3 cut(s)	83, 110, 489
LpnPI	CCDG	1 cut(s)	280
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	138, 532
MalI	GATC	7 cut(s)	21, 93, 125, 153, 159, 232, 377
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
MboII	GAAGA	2 cut(s)	118, 152
MflI	RGATCY	2 cut(s)	91, 123
MhlI	GDGCHC	5 cut(s)	188, 239, 261, 274, 486
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	126
MspI	CCGG	2 cut(s)	267, 568
MvnI	CGCG	2 cut(s)	54, 480
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NdeII	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
NlaIII	CATG	3 cut(s)	65, 167, 341
NlaIV	GGNNCC	2 cut(s)	93, 106
NmeAIII	GCCGAG	1 cut(s)	522
PaeR7I	CTCGAG	2 cut(s)	187, 496
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 549
PfeI	GAWTC	2 cut(s)	194, 301
PflFI	GACNNNGTC	1 cut(s)	563
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	2 cut(s)	188, 486
PspN4I	GGNNCC	2 cut(s)	93, 106
PspPI	GGNCC	1 cut(s)	565
PspXI	VCTCGAGB	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	91, 123
PsyI	GACNNNGTC	1 cut(s)	563
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SacI	GAGCTC	2 cut(s)	188, 486
SalI	GTCGAC	1 cut(s)	178
Sau3AI	GATC	7 cut(s)	19, 91, 123, 151, 157, 230, 375
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	5 cut(s)	188, 239, 261, 274, 486
SfaNI	GCATC	1 cut(s)	433
Sfr274I	CTCGAG	2 cut(s)	187, 496
SgrAI	CRCCGGYG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	565
SlaI	CTCGAG	2 cut(s)	187, 496
SmlI	CTYRAG	4 cut(s)	134, 187, 240, 496
SmoI	CTYRAG	4 cut(s)	134, 187, 240, 496
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	4 cut(s)	39, 81, 86, 111
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	2 cut(s)	188, 486
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	144, 538
TaqI	TCGA	9 cut(s)	33, 179, 188, 432, 448, 459, 497, 512, 558
TasI	AATT	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	194, 301
TspDTI	ATGAA	3 cut(s)	152, 413, 420
TspGWI	ACGGA	2 cut(s)	84, 308
Tth111I	GACNNNGTC	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	1 cut(s)	343
XhoI	CTCGAG	2 cut(s)	187, 496
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.