Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Forward (+)

11275738 .. 11280647

Gene Structure 4910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAAGAAAGTATTGAAATTCTGCTTAACTGCCTGTTTGAGTCCAATAACGGGGTCGTTATGGTGCTGCAAATTTGGGTGATTTTTTTGGATGCCTCTGGTGCTCCAAATTTGGATCGACGTCGGTTGATGGTCGTGTTGGACGCGCCGTACATGGTGGGAGTGGTGGATCTGTCCTTCAGCTCCTCCTCGAATATCAAGCTCGATTTACAGTCGGACGATCGTGATCTTCCTGTAGTAGGCAAATCGACAAGCTCGGAGAGATTCAACAGTTTATCATGGTCCAAGCCCGCTGCTGGATCAAGTTATCATGACTTTGGCCTTCGACTCATCGTCGGTGGACTCATCAATGGGACTATTGATATCTGGAATCCGCTCACTCTGATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

4.96

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	376
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	291, 374
AclWI	GGATC	4 cut(s)	123, 177, 307, 379
AcsI	RAATTY	3 cut(s)	18, 72, 109
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	51, 239, 296
AgsI	TTSAA	2 cut(s)	17, 268
AhdI	GACNNNNNGTC	1 cut(s)	332
AluBI	AGCT	3 cut(s)	183, 202, 255
AluI	AGCT	3 cut(s)	183, 202, 255
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	4 cut(s)	123, 177, 307, 379
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	67, 293
ApoI	RAATTY	3 cut(s)	18, 72, 109
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	54, 280
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	68, 294
BlsI	GCNGC	2 cut(s)	69, 295
Bme18I	GGWCC	1 cut(s)	282
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 239, 296
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	51, 239, 296
BseRI	GAGGAG	2 cut(s)	175, 178
BseXI	GCAGC	2 cut(s)	54, 280
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	51, 239, 296
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
BspACI	CCGC	2 cut(s)	291, 374
BspANI	GGCC	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	310
BspPI	GGATC	4 cut(s)	123, 177, 307, 379
BsrBI	CCGCTC	1 cut(s)	376
BssMI	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
BssNI	GRCGYC	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	213, 272
BstACI	GRCGYC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	6 cut(s)	118, 172, 223, 229, 302, 387
BstMBI	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	54, 280
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	282
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	154, 279, 311
CviJI	RGCY	5 cut(s)	183, 202, 255, 289, 321
CviKI_1	RGCY	5 cut(s)	183, 202, 255, 289, 321
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	6 cut(s)	117, 171, 222, 228, 301, 386
DpnII	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
DriI	GACNNNNNGTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	3 cut(s)	157, 282, 314
FaiI	YATR	4 cut(s)	62, 155, 280, 312
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	153, 278, 310
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	68, 294
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	68, 294
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	68, 294
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	157, 282, 314
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	5 cut(s)	41, 264, 327, 342, 370
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	3 cut(s)	217, 259, 384
Hpy188III	TCNNGA	3 cut(s)	224, 311, 367
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	3 cut(s)	123, 126, 338
HpyAV	CCTTC	2 cut(s)	187, 332
HpyCH4III	ACNGT	2 cut(s)	213, 272
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	157, 282, 314
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
LmnI	GCTCC	2 cut(s)	109, 188
LpnPI	CCDG	5 cut(s)	47, 84, 246, 282, 352
Lsp1109I	GCAGC	2 cut(s)	54, 280
LweI	GCATC	1 cut(s)	82
MaeII	ACGT	1 cut(s)	121
MalI	GATC	6 cut(s)	117, 171, 222, 228, 301, 386
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	3 cut(s)	18, 72, 109
MlyI	GAGTC	3 cut(s)	50, 321, 336
MmeI	TCCRAC	2 cut(s)	120, 195
MnlI	CCTC	3 cut(s)	106, 196, 199
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
NlaIII	CATG	3 cut(s)	157, 282, 314
PagI	TCATGA	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	264, 370
PkrI	GCNGC	2 cut(s)	69, 295
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	3 cut(s)	49, 321, 336
PpsI	GAGTC	3 cut(s)	49, 321, 336
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	169
PvuI	CGATCG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	68, 294
Sau3AI	GATC	6 cut(s)	115, 169, 220, 226, 299, 384
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	3 cut(s)	50, 321, 336
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	4 cut(s)	124, 185, 204, 257
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	282
Sse9I	AATT	3 cut(s)	18, 72, 109
SsiI	CCGC	2 cut(s)	291, 374
TaaI	ACNGT	2 cut(s)	213, 272
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	5 cut(s)	118, 191, 204, 248, 325
TasI	AATT	3 cut(s)	18, 72, 109
TfiI	GAWTC	2 cut(s)	264, 370
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	2 cut(s)	67, 293
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	282
XagI	CCTNNNNNAGG	1 cut(s)	237
XapI	RAATTY	3 cut(s)	18, 72, 109
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.