Rmu_sc0007941.1_g000001

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007941.1
OG0013745
Physical Location & Seq
Forward (+)
3153 .. 4076
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007941.1_g000001.1.cds

Sequence Viewer

Length: 249 bp
atggcgggaatggtggatctgtccttcagctcctacttgaatatcaagctcgatttacagtcggacgatcgtgatcttcctgtagtaggcgagtcgacaagctcggagagattcaacagtttatcatggtccaagcccgctgctggatcaagttatcatgactttggccttcgactcatcgccggtggactcatcaatgggactattgatatctggaatccgctcactctgatccggtccgcttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
SRA1 Sec16_C WD40

Protein Analysis

82

Amino Acids

8.88

Weight (kDa)

4.7

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 95
AciI CCGC 4 cut(s) 5, 138, 221, 240
AclWI GGATC 3 cut(s) 24, 154, 226
AcuI CTGAAG 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 86, 143
AgsI TTSAA 2 cut(s) 40, 115
AluBI AGCT 3 cut(s) 30, 49, 102
AluI AGCT 3 cut(s) 30, 49, 102
AlwI GGATC 3 cut(s) 24, 154, 226
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 129, 237
AvaII GGWCC 2 cut(s) 129, 237
BbvI GCAGC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 2 cut(s) 129, 237
BmgT120I GGNCC 2 cut(s) 129, 237
BsaBI GATNNNNATC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 143
Bse118I RCCGGY 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 86, 143
BseXI GCAGC 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 183, 235
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 86, 143
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 16, 67, 73, 146, 231
BspACI CCGC 4 cut(s) 5, 138, 221, 240
BspANI GGCC 1 cut(s) 168
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 3 cut(s) 24, 154, 226
BsrBI CCGCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssMI GATC 5 cut(s) 16, 67, 73, 146, 231
Bst4CI ACNGT 2 cut(s) 60, 119
BstC8I GCNNGC 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 84
BstKTI GATC 5 cut(s) 19, 70, 76, 149, 234
BstMBI GATC 5 cut(s) 16, 67, 73, 146, 231
BstMCI CGRYCG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 129, 237
CpoI CGGWCCG 1 cut(s) 237
CspI CGGWCCG 1 cut(s) 237
CviAII CATG 2 cut(s) 126, 158
CviJI RGCY 5 cut(s) 30, 49, 102, 136, 168
CviKI_1 RGCY 5 cut(s) 30, 49, 102, 136, 168
DpnI GATC 5 cut(s) 18, 69, 75, 148, 233
DpnII GATC 5 cut(s) 16, 67, 73, 146, 231
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 129, 237
Eco57I CTGAAG 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 211
FaeI CATG 2 cut(s) 129, 161
FaiI YATR 2 cut(s) 127, 159
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 125, 157
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 183, 235
Hin1II CATG 2 cut(s) 129, 161
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 5 cut(s) 92, 111, 174, 189, 217
HpaII CCGG 2 cut(s) 183, 235
Hpy166II GTNNAC 2 cut(s) 96, 188
Hpy188I TCNGA 3 cut(s) 64, 106, 231
Hpy188III TCNNGA 4 cut(s) 71, 158, 214, 246
Hpy8I GTNNAC 2 cut(s) 96, 188
HpyAV CCTTC 2 cut(s) 34, 179
HpyCH4III ACNGT 2 cut(s) 60, 119
Hsp92II CATG 2 cut(s) 129, 161
Kzo9I GATC 5 cut(s) 16, 67, 73, 146, 231
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 93, 129, 196, 199
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 5 cut(s) 18, 69, 75, 148, 233
MbiI CCGCTC 1 cut(s) 223
MboI GATC 5 cut(s) 16, 67, 73, 146, 231
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 16
MlyI GAGTC 3 cut(s) 101, 168, 183
MmeI TCCRAC 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 183, 235
NdeII GATC 5 cut(s) 16, 67, 73, 146, 231
NlaIII CATG 2 cut(s) 129, 161
PagI TCATGA 1 cut(s) 157
PfeI GAWTC 2 cut(s) 111, 217
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 3 cut(s) 100, 168, 183
PpsI GAGTC 3 cut(s) 100, 168, 183
PspPI GGNCC 2 cut(s) 129, 237
PsuI RGATCY 1 cut(s) 16
PvuI CGATCG 1 cut(s) 70
Rsr2I CGGWCCG 1 cut(s) 237
RsrII CGGWCCG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 94
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 5 cut(s) 16, 67, 73, 146, 231
Sau96I GGNCC 2 cut(s) 129, 237
SchI GAGTC 3 cut(s) 101, 168, 183
SetI ASST 3 cut(s) 32, 51, 104
SfcI CTRYAG 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 2 cut(s) 129, 237
SsiI CCGC 4 cut(s) 5, 138, 221, 240
TaaI ACNGT 2 cut(s) 60, 119
TaqI TCGA 3 cut(s) 51, 95, 172
TfiI GAWTC 2 cut(s) 111, 217
TseI GCWGC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 129, 237
XagI CCTNNNNNAGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.