Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Reverse (-)

21330862 .. 21331116

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTCGTGCCGGACGCGCCGTACATGGCGGCTGGGACAATGGCGGGAGTGGTGGATCTGTCCTTCAGCTCCTCCTCGAATAACAAGCTCGATTTACAGTCAGACGATCGTGATCTTCCTATAGTAGGCGAGTCGACAAGCTCGGAGAGATTCAACAGTTTATCATGGTCCAAGCCCGCTGCTGGATCAAGTTATCACGACTTTGGCCTTCGACTCATCGCCGGTGGACTCATCAATGGGACTATTGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

84

Amino Acids

8.82

Weight (kDa)

4.33

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	29, 44, 177
AclWI	GGATC	2 cut(s)	63, 193
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	125, 182
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	3 cut(s)	69, 88, 141
AluI	AGCT	3 cut(s)	69, 88, 141
AlwI	GGATC	2 cut(s)	63, 193
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	30, 180
BlsI	GCNGC	2 cut(s)	31, 181
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 182
Bse118I	RCCGGY	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	125, 182
BseRI	GAGGAG	2 cut(s)	61, 64
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	11, 222
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	125, 182
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	4 cut(s)	55, 106, 112, 185
BspACI	CCGC	3 cut(s)	29, 44, 177
BspANI	GGCC	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	17
BspPI	GGATC	2 cut(s)	63, 193
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	4 cut(s)	55, 106, 112, 185
Bst4CI	ACNGT	2 cut(s)	99, 158
BstC8I	GCNNGC	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	58, 109, 115, 188
BstMBI	GATC	4 cut(s)	55, 106, 112, 185
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	25, 165
CviJI	RGCY	6 cut(s)	32, 69, 88, 141, 175, 207
CviKI_1	RGCY	6 cut(s)	32, 69, 88, 141, 175, 207
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	4 cut(s)	57, 108, 114, 187
DpnII	GATC	4 cut(s)	55, 106, 112, 185
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	2 cut(s)	28, 168
FaiI	YATR	3 cut(s)	26, 122, 166
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	24, 164
FauI	CCCGC	2 cut(s)	37, 184
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	30, 180
Fsp4HI	GCNGC	2 cut(s)	30, 180
FspBI	CTAG	1 cut(s)	253
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	30, 180
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	11, 222
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	28, 168
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	4 cut(s)	131, 150, 213, 228
HpaII	CCGG	2 cut(s)	11, 222
Hpy166II	GTNNAC	2 cut(s)	135, 227
Hpy188I	TCNGA	2 cut(s)	103, 145
Hpy188III	TCNNGA	2 cut(s)	110, 197
Hpy8I	GTNNAC	2 cut(s)	135, 227
HpyAV	CCTTC	2 cut(s)	73, 218
HpyCH4III	ACNGT	2 cut(s)	99, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	28, 168
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	4 cut(s)	55, 106, 112, 185
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	18, 24, 168, 235
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	253
MalI	GATC	4 cut(s)	57, 108, 114, 187
MboI	GATC	4 cut(s)	55, 106, 112, 185
MboII	GAAGA	1 cut(s)	107
MflI	RGATCY	1 cut(s)	55
MlyI	GAGTC	3 cut(s)	140, 207, 222
MnlI	CCTC	2 cut(s)	82, 85
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	11, 222
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	55, 106, 112, 185
NlaIII	CATG	2 cut(s)	28, 168
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	31, 181
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	3 cut(s)	139, 207, 222
PpsI	GAGTC	3 cut(s)	139, 207, 222
PspFI	CCCAGC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	133
SatI	GCNGC	2 cut(s)	30, 180
Sau3AI	GATC	4 cut(s)	55, 106, 112, 185
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	3 cut(s)	140, 207, 222
SetI	ASST	3 cut(s)	71, 90, 143
SfcI	CTRYAG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	168
SsiI	CCGC	3 cut(s)	29, 44, 177
SspMI	CTAG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	99, 158
TaqI	TCGA	4 cut(s)	77, 90, 134, 211
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.