Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009323.1

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1389

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

gaccgtgcatctccgctggcaccatcccgtctcagccggcatccaatttctcgatcgcgcgtcttcaccagtgcatcgtcgagtacactttgggagatcagatcgacgtcggttgggacaatggcgggaatggtggatctgtccttgagctcctactcgaatatcaagctcgatttacagtcggacgatcgtgatcttcctgtagtaggcgagtcgacaagctcggggagattcaacagtttatcatggtccaagcccgctgctggatcaagttatcatgactttggccttcgactcatcgccggtggactcatcaatgggactattgatatctggaatccgctcactctgatccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

119

Amino Acids

12.84

Weight (kDa)

9.51

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	2 cut(s)	58, 60
AciI	CCGC	4 cut(s)	14, 125, 258, 341
AclWI	GGATC	3 cut(s)	144, 274, 346
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	206, 263
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	3 cut(s)	150, 169, 222
AluI	AGCT	3 cut(s)	150, 169, 222
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	144, 274, 346
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	3 cut(s)	17, 49, 83
BpiI	GAAGAC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 263
Bse118I	RCCGGY	2 cut(s)	36, 302
Bse1I	ACTGG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	192
BseGI	GGATG	2 cut(s)	23, 40
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	206, 263
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	2 cut(s)	58, 60
Bsh1285I	CGRYCG	2 cut(s)	56, 190
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	2 cut(s)	56, 190
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	37, 303, 355
BslFI	GGGAC	2 cut(s)	130, 334
BslI	CCNNNNNNNGG	2 cut(s)	206, 263
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	130, 334
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
BspACI	CCGC	4 cut(s)	14, 125, 258, 341
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	2 cut(s)	58, 60
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	3 cut(s)	144, 274, 346
BspT107I	GGYRCC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	36, 302
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	2 cut(s)	36, 302
BssMI	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	5, 180, 239
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	18, 38, 258
BstDEI	CTNAG	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	23, 40
BstFNI	CGCG	2 cut(s)	58, 60
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	8 cut(s)	56, 99, 104, 139, 190, 196, 269, 354
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
BstMCI	CGRYCG	2 cut(s)	56, 190
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	2 cut(s)	58, 60
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	23, 40
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	18, 38, 258
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	2 cut(s)	36, 302
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	246, 278
CviJI	RGCY	6 cut(s)	36, 150, 169, 222, 256, 288
CviKI_1	RGCY	6 cut(s)	36, 150, 169, 222, 256, 288
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	8 cut(s)	55, 98, 103, 138, 189, 195, 268, 353
DpnII	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	249, 281
FaiI	YATR	2 cut(s)	247, 279
FaqI	GGGAC	2 cut(s)	130, 334
FatI	CATG	2 cut(s)	245, 277
FauI	CCCGC	2 cut(s)	118, 265
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	10, 27
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	3 cut(s)	37, 303, 355
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	249, 281
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	5 cut(s)	212, 231, 294, 309, 337
HpaII	CCGG	3 cut(s)	37, 303, 355
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	86, 216, 308
Hpy188I	TCNGA	3 cut(s)	101, 184, 351
Hpy188III	TCNNGA	4 cut(s)	51, 191, 278, 334
Hpy8I	GTNNAC	3 cut(s)	86, 216, 308
Hpy99I	CGWCG	3 cut(s)	82, 109, 112
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	5, 180, 239
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	8, 74
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	249, 281
HspAI	GCGC	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	2, 50, 82, 213, 249, 316, 319
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	3 cut(s)	17, 49, 83
MaeII	ACGT	1 cut(s)	107
MalI	GATC	8 cut(s)	55, 98, 103, 138, 189, 195, 268, 353
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
MboII	GAAGA	2 cut(s)	55, 188
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	221, 288, 303
MmeI	TCCRAC	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	36
MspA1I	CMGCKG	2 cut(s)	16, 260
MspI	CCGG	3 cut(s)	37, 303, 355
MvnI	CGCG	2 cut(s)	58, 60
NaeI	GCCGGC	1 cut(s)	38
NdeII	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	249, 281
NlaIV	GGNNCC	1 cut(s)	21
PagI	TCATGA	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	231, 337
PkrI	GCNGC	1 cut(s)	262
Ple19I	CGATCG	2 cut(s)	56, 190
PleI	GAGTC	3 cut(s)	220, 288, 303
PpsI	GAGTC	3 cut(s)	220, 288, 303
Psp124BI	GAGCTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	136
PvuI	CGATCG	2 cut(s)	56, 190
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	214
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	8 cut(s)	53, 96, 101, 136, 187, 193, 266, 351
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	3 cut(s)	221, 288, 303
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	4 cut(s)	110, 152, 171, 224
SfaNI	GCATC	3 cut(s)	17, 49, 83
SfcI	CTRYAG	1 cut(s)	201
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	4 cut(s)	14, 125, 258, 341
SstI	GAGCTC	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	5, 180, 239
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	7 cut(s)	52, 80, 104, 158, 171, 215, 292
TasI	AATT	1 cut(s)	45
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	231, 337
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	260
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.