Rh4BG187600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013745
Physical Location & Seq
Reverse (-)
32716065 .. 32716398
334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG187600.1

Sequence Viewer

Length: 234 bp
ATGCGTCTCTGCCGGCACACCATCCCGTCTTCACCGGCATCCAAGTGCTCAATCCCGCGTCTTCGCCAGCGCACCGTCGAGTACGCTTTGGGAGATCAGATCGGCGTCGGTGGCGGTCGTGCCCAACGCATCGTACATGGCGACCGTGACGATGGCGGGAGCAGTGGATTTGTCCTTCAGCTCCTCCGCAAGTATCGAGATCTTCAAGCTCGATTAACAGTCGGACGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

11.09

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 58
AciI CCGC 4 cut(s) 56, 114, 156, 187
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 83, 135
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 2 cut(s) 181, 209
AluI AGCT 2 cut(s) 181, 209
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 124
BbsI GAAGAC 2 cut(s) 21, 53
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 2 cut(s) 29, 146
BcoDI GTCTC 1 cut(s) 11
BglII AGATCT 1 cut(s) 199
BmsI GCATC 2 cut(s) 47, 138
BpiI GAAGAC 2 cut(s) 21, 53
BsaHI GRCGYC 1 cut(s) 105
Bse118I RCCGGY 2 cut(s) 12, 34
BseGI GGATG 2 cut(s) 21, 38
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 3 cut(s) 118, 145, 230
BsiEI CGRYCG 3 cut(s) 118, 145, 230
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 13, 35
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 50, 124
Bsp143I GATC 4 cut(s) 94, 99, 199, 227
BspACI CCGC 4 cut(s) 56, 114, 156, 187
BspFNI CGCG 1 cut(s) 58
BsrFI RCCGGY 2 cut(s) 12, 34
BssAI RCCGGY 2 cut(s) 12, 34
BssMI GATC 4 cut(s) 94, 99, 199, 227
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 76, 146, 220
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 14, 68
BstF5I GGATG 2 cut(s) 21, 38
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 97, 102, 202, 230
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 94, 99, 199, 227
BstMCI CGRYCG 3 cut(s) 118, 145, 230
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 21, 53
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 2 cut(s) 21, 38
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 14, 68
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 2 cut(s) 12, 34
CseI GACGC 2 cut(s) 47, 94
Csp6I GTAC 2 cut(s) 82, 134
CviAII CATG 1 cut(s) 137
CviJI RGCY 2 cut(s) 181, 209
CviKI_1 RGCY 2 cut(s) 181, 209
CviQI GTAC 2 cut(s) 82, 134
DpnI GATC 4 cut(s) 96, 101, 201, 229
DpnII GATC 4 cut(s) 94, 99, 199, 227
Eco57I CTGAAG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 1 cut(s) 140
FaiI YATR 1 cut(s) 138
FatI CATG 1 cut(s) 136
FauI CCCGC 2 cut(s) 63, 149
FokI GGATG 2 cut(s) 8, 25
GlaI GCGC 1 cut(s) 71
HapII CCGG 2 cut(s) 13, 35
HgaI GACGC 2 cut(s) 47, 94
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HpaII CCGG 2 cut(s) 13, 35
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 99, 224
Hpy188III TCNNGA 2 cut(s) 197, 231
Hpy99I CGWCG 2 cut(s) 80, 110
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 76, 146, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 12
KroNI GCCGGC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 94, 99, 199, 227
LmnI GCTCC 2 cut(s) 159, 186
LpnPI CCDG 3 cut(s) 26, 48, 80
LweI GCATC 2 cut(s) 47, 138
MaeIII GTNAC 1 cut(s) 146
MalI GATC 4 cut(s) 96, 101, 201, 229
MboI GATC 4 cut(s) 94, 99, 199, 227
MboII GAAGA 3 cut(s) 21, 53, 194
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 50, 124
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 12
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 43
MspI CCGG 2 cut(s) 13, 35
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 111
NaeI GCCGGC 1 cut(s) 14
NdeII GATC 4 cut(s) 94, 99, 199, 227
NgoMIV GCCGGC 1 cut(s) 12
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 14
Ple19I CGATCG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 230
RsaI GTAC 2 cut(s) 83, 135
RsaNI GTAC 2 cut(s) 82, 134
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 4 cut(s) 94, 99, 199, 227
SduI GDGCHC 2 cut(s) 50, 124
SetI ASST 2 cut(s) 183, 211
SfaNI GCATC 2 cut(s) 47, 138
SmiMI CAYNNNNRTG 1 cut(s) 43
SsiI CCGC 4 cut(s) 56, 114, 156, 187
TaaI ACNGT 3 cut(s) 76, 146, 220
TaqI TCGA 3 cut(s) 78, 196, 211
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspRI CASTG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.