Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002236.1

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Forward (+)

64386 .. 64664

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002236.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atggtcgtgccggacgcgccgtacatggcggttgggacaatggcgggaatggtggatctgtccttcagctcctactcgaatatcaagctcgatttacagtcggacgatcgtgatcttcctgtagtaggcgagtcgacaagctcggagagattcaacagtttatcatggtccaagcccgctgctggatcaagttatcatgactttggccttcgactcatcgccggtggactcatcaatgggactattgatatctggaatccgctcactctgatccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

92

Amino Acids

9.94

Weight (kDa)

4.52

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	29, 44, 177, 260
AclWI	GGATC	3 cut(s)	63, 193, 265
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	125, 182
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	3 cut(s)	69, 88, 141
AluI	AGCT	3 cut(s)	69, 88, 141
AlwI	GGATC	3 cut(s)	63, 193, 265
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 182
Bse118I	RCCGGY	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	125, 182
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	11, 222, 274
BslFI	GGGAC	2 cut(s)	49, 253
BslI	CCNNNNNNNGG	2 cut(s)	125, 182
BsmFI	GGGAC	2 cut(s)	49, 253
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	55, 106, 112, 185, 270
BspACI	CCGC	4 cut(s)	29, 44, 177, 260
BspANI	GGCC	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	3 cut(s)	63, 193, 265
BsrBI	CCGCTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	5 cut(s)	55, 106, 112, 185, 270
Bst4CI	ACNGT	2 cut(s)	99, 158
BstC8I	GCNNGC	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	5 cut(s)	58, 109, 115, 188, 273
BstMBI	GATC	5 cut(s)	55, 106, 112, 185, 270
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	25, 165, 197
CviJI	RGCY	5 cut(s)	69, 88, 141, 175, 207
CviKI_1	RGCY	5 cut(s)	69, 88, 141, 175, 207
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	5 cut(s)	57, 108, 114, 187, 272
DpnII	GATC	5 cut(s)	55, 106, 112, 185, 270
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	3 cut(s)	28, 168, 200
FaiI	YATR	3 cut(s)	26, 166, 198
FaqI	GGGAC	2 cut(s)	49, 253
FatI	CATG	3 cut(s)	24, 164, 196
FauI	CCCGC	2 cut(s)	37, 184
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	3 cut(s)	11, 222, 274
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	28, 168, 200
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	5 cut(s)	131, 150, 213, 228, 256
HpaII	CCGG	3 cut(s)	11, 222, 274
Hpy166II	GTNNAC	2 cut(s)	135, 227
Hpy188I	TCNGA	3 cut(s)	103, 145, 270
Hpy188III	TCNNGA	3 cut(s)	110, 197, 253
Hpy8I	GTNNAC	2 cut(s)	135, 227
HpyAV	CCTTC	2 cut(s)	73, 218
HpyCH4III	ACNGT	2 cut(s)	99, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	28, 168, 200
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	5 cut(s)	55, 106, 112, 185, 270
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	5 cut(s)	24, 132, 168, 235, 238
Lsp1109I	GCAGC	1 cut(s)	166
MalI	GATC	5 cut(s)	57, 108, 114, 187, 272
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	5 cut(s)	55, 106, 112, 185, 270
MboII	GAAGA	1 cut(s)	107
MflI	RGATCY	1 cut(s)	55
MlyI	GAGTC	3 cut(s)	140, 207, 222
MmeI	TCCRAC	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	11, 222, 274
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	5 cut(s)	55, 106, 112, 185, 270
NlaIII	CATG	3 cut(s)	28, 168, 200
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	150, 256
PkrI	GCNGC	1 cut(s)	181
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	3 cut(s)	139, 207, 222
PpsI	GAGTC	3 cut(s)	139, 207, 222
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	5 cut(s)	55, 106, 112, 185, 270
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	3 cut(s)	140, 207, 222
SetI	ASST	3 cut(s)	71, 90, 143
SfcI	CTRYAG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	168
SsiI	CCGC	4 cut(s)	29, 44, 177, 260
TaaI	ACNGT	2 cut(s)	99, 158
TaqI	TCGA	4 cut(s)	77, 90, 134, 211
TfiI	GAWTC	2 cut(s)	150, 256
TseI	GCWGC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.