Rh7AG317400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013745
Physical Location & Seq
Reverse (-)
35688009 .. 35688342
334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG317400.1

Sequence Viewer

Length: 234 bp
ATGCGTCTCCGGCGACGCACCATCTTATCTCCACCGACTTCCAATTGTTCGATTGCGCGTCTTCACCGGCGCACCGTGGAATATGCTTTGGGAGACCAGATCGGCGTCGATGGCGGTCTTGCAGGACGCGCCGTACATGGAGGTCGGGACGATGGCGGGAGCGGTGGATCTGTGATTCAGCTCCTCCACGAATATCGAGATCTTCAAGCTCGAGTTATAGTCAGACGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.42

Weight (kDa)

11.29

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 2 cut(s) 58, 129
AciI CCGC 3 cut(s) 114, 156, 162
AclWI GGATC 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 2 cut(s) 181, 209
AluI AGCT 2 cut(s) 181, 209
Alw26I GTCTC 2 cut(s) 11, 87
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 210
AspLEI GCGC 3 cut(s) 58, 72, 131
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 29, 104, 146
BceAI ACGGC 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 11, 87
BglII AGATCT 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 58, 129
Bsh1285I CGRYCG 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 10, 67
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 11, 87
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 210
Bsp143I GATC 4 cut(s) 99, 167, 199, 227
BspACI CCGC 3 cut(s) 114, 156, 162
BspFNI CGCG 2 cut(s) 58, 129
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 99, 167, 199, 227
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 2 cut(s) 58, 129
BstHHI GCGC 3 cut(s) 58, 72, 131
BstKTI GATC 4 cut(s) 102, 170, 202, 230
BstMAI GTCTC 2 cut(s) 11, 87
BstMBI GATC 4 cut(s) 99, 167, 199, 227
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 3 cut(s) 10, 111, 128
BstUI CGCG 2 cut(s) 58, 129
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 167, 199
BstYI RGATCY 2 cut(s) 167, 199
BtgI CCRYGG 1 cut(s) 75
CfoI GCGC 3 cut(s) 58, 72, 131
Cfr10I RCCGGY 1 cut(s) 66
CseI GACGC 4 cut(s) 24, 47, 94, 135
Csp6I GTAC 1 cut(s) 134
CviAII CATG 1 cut(s) 137
CviJI RGCY 2 cut(s) 181, 209
CviKI_1 RGCY 2 cut(s) 181, 209
CviQI GTAC 1 cut(s) 134
DpnI GATC 4 cut(s) 101, 169, 201, 229
DpnII GATC 4 cut(s) 99, 167, 199, 227
Eco31I GGTCTC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 84, 138, 218
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 149
GlaI GCGC 3 cut(s) 57, 71, 130
HapII CCGG 2 cut(s) 10, 67
HgaI GACGC 4 cut(s) 24, 47, 94, 135
HhaI GCGC 3 cut(s) 58, 72, 131
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 3 cut(s) 56, 70, 129
HinP1I GCGC 3 cut(s) 56, 70, 129
HinfI GANTC 1 cut(s) 175
HpaII CCGG 2 cut(s) 10, 67
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 3 cut(s) 146, 197, 231
Hpy99I CGWCG 2 cut(s) 18, 110
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 111, 128
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 3 cut(s) 56, 70, 129
Kzo9I GATC 4 cut(s) 99, 167, 199, 227
LmnI GCTCC 2 cut(s) 159, 186
LpnPI CCDG 4 cut(s) 23, 80, 108, 110
MalI GATC 4 cut(s) 101, 169, 201, 229
MbiI CCGCTC 1 cut(s) 162
MboI GATC 4 cut(s) 99, 167, 199, 227
MboII GAAGA 2 cut(s) 53, 194
MfeI CAATTG 1 cut(s) 43
MflI RGATCY 2 cut(s) 167, 199
MluCI AATT 1 cut(s) 43
MnlI CCTC 2 cut(s) 134, 194
MspI CCGG 2 cut(s) 10, 67
MunI CAATTG 1 cut(s) 43
MvnI CGCG 2 cut(s) 58, 129
MwoI GCNNNNNNNGC 3 cut(s) 10, 111, 128
NdeII GATC 4 cut(s) 99, 167, 199, 227
NlaIII CATG 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 210
PfeI GAWTC 1 cut(s) 175
Ple19I CGATCG 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 210
PsuI RGATCY 2 cut(s) 167, 199
PvuI CGATCG 1 cut(s) 230
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
Sau3AI GATC 4 cut(s) 99, 167, 199, 227
SetI ASST 3 cut(s) 145, 183, 211
Sfr274I CTCGAG 1 cut(s) 210
SgrAI CRCCGGYG 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 114, 156, 162
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 4 cut(s) 50, 108, 196, 211
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.