RLG00000016679

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013745
Physical Location & Seq
Reverse (-)
8907821 .. 8908296
476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016679

Sequence Viewer

Length: 357 bp
ATGCGTCTCCGGCGACGCACCATCTTGTCTCCGCCGGCTTCCAATTGTTCGATTGCGCGTCTTCACCGGCGCACCATGGAATCGGCGTCGATGGCGGTCTTGCAGGACGCGCCGTACATGGAGGTCGGGATGATGGCGGGAGCAGTGGATCTGTCATTCAGCTCCTCCACGAATATCGAGATCTTCAAGCTCAAGTTAAAGTCAGACAATCGTGATCTTCATGTAGTGGGCGAGTCGACGAGCTCTGAGAGATTCAACAGGTTATCGTGGTTCAAGCTCGCTGCTAGATCAGGCTCTCAAGACTTTAGCCTTGGGCTCATCGCCGGTGCACTTGTCAATGAGACTATTATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
SRA1 Sec16_C WD40

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

9.84

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AccII CGCG 2 cut(s) 58, 110
AciI CCGC 3 cut(s) 32, 95, 137
AclWI GGATC 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 3 cut(s) 187, 256, 274
AluBI AGCT 4 cut(s) 162, 190, 243, 277
AluI AGCT 4 cut(s) 162, 190, 243, 277
Alw21I GWGCWC 2 cut(s) 245, 331
Alw26I GTCTC 3 cut(s) 11, 33, 335
Alw44I GTGCAC 1 cut(s) 327
AlwI GGATC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 3 cut(s) 58, 72, 112
AsuHPI GGTGA 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 2 cut(s) 245, 318
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 245, 331
BbvI GCAGC 1 cut(s) 268
BccI CCATC 3 cut(s) 29, 85, 127
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 11, 33, 335
BfaI CTAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 176, 282
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 75, 310
Bse118I RCCGGY 3 cut(s) 34, 66, 323
BseDI CCNNGG 2 cut(s) 75, 310
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 268
Bsh1236I CGCG 2 cut(s) 58, 110
BsiHKAI GWGCWC 2 cut(s) 245, 331
BsiSI CCGG 4 cut(s) 10, 35, 67, 324
BsmAI GTCTC 3 cut(s) 11, 33, 335
BsmBI CGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 245, 318, 331
Bsp143I GATC 4 cut(s) 148, 180, 214, 287
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 32, 95, 137
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 2 cut(s) 58, 110
BspPI GGATC 1 cut(s) 156
BsrFI RCCGGY 3 cut(s) 34, 66, 323
BssAI RCCGGY 3 cut(s) 34, 66, 323
BssECI CCNNGG 2 cut(s) 75, 310
BssMI GATC 4 cut(s) 148, 180, 214, 287
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 75, 310
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 36, 279
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 58, 110
BstHHI GCGC 3 cut(s) 58, 72, 112
BstKTI GATC 4 cut(s) 151, 183, 217, 290
BstMAI GTCTC 3 cut(s) 11, 33, 335
BstMBI GATC 4 cut(s) 148, 180, 214, 287
BstMWI GCNNNNNNNGC 3 cut(s) 10, 92, 109
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 2 cut(s) 58, 110
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 148, 180
BstYI RGATCY 2 cut(s) 148, 180
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 36, 279
CfoI GCGC 3 cut(s) 58, 72, 112
Cfr10I RCCGGY 3 cut(s) 34, 66, 323
CseI GACGC 4 cut(s) 24, 47, 75, 116
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 76, 118, 221
CviJI RGCY 8 cut(s) 38, 162, 190, 243, 277, 294, 309, 316
CviKI_1 RGCY 8 cut(s) 38, 162, 190, 243, 277, 294, 309, 316
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 246
DpnI GATC 4 cut(s) 150, 182, 216, 289
DpnII GATC 4 cut(s) 148, 180, 214, 287
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 75, 310
Eco24I GRGCYC 2 cut(s) 245, 318
Eco53kI GAGCTC 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 75, 310
EcoT38I GRGCYC 2 cut(s) 245, 318
ErhI CCWWGG 2 cut(s) 75, 310
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 79, 121, 224
FaiI YATR 4 cut(s) 77, 119, 222, 350
FatI CATG 3 cut(s) 75, 117, 220
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 2 cut(s) 245, 318
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 285
GlaI GCGC 3 cut(s) 57, 71, 111
GluI GCNGC 1 cut(s) 282
HapII CCGG 4 cut(s) 10, 35, 67, 324
HgaI GACGC 4 cut(s) 24, 47, 75, 116
HhaI GCGC 3 cut(s) 58, 72, 112
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 79, 121, 224
Hin6I GCGC 3 cut(s) 56, 70, 110
HinP1I GCGC 3 cut(s) 56, 70, 110
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 3 cut(s) 80, 233, 252
HpaII CCGG 4 cut(s) 10, 35, 67, 324
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 237, 329
Hpy188I TCNGA 2 cut(s) 205, 247
Hpy188III TCNNGA 4 cut(s) 127, 178, 212, 299
Hpy8I GTNNAC 2 cut(s) 237, 329
Hpy99I CGWCG 3 cut(s) 18, 91, 241
HpyCH4V TGCA 2 cut(s) 103, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 92, 109
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 79, 121, 224
HspAI GCGC 3 cut(s) 56, 70, 110
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 148, 180, 214, 287
LmnI GCTCC 2 cut(s) 140, 167
LpnPI CCDG 7 cut(s) 23, 48, 80, 89, 244, 276, 337
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 1 cut(s) 285
MalI GATC 4 cut(s) 150, 182, 216, 289
MboI GATC 4 cut(s) 148, 180, 214, 287
MboII GAAGA 3 cut(s) 53, 175, 209
MfeI CAATTG 1 cut(s) 43
MflI RGATCY 2 cut(s) 148, 180
MhlI GDGCHC 3 cut(s) 245, 318, 331
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 2 cut(s) 115, 175
MroNI GCCGGC 1 cut(s) 34
MseI TTAA 1 cut(s) 197
MspI CCGG 4 cut(s) 10, 35, 67, 324
MunI CAATTG 1 cut(s) 43
MvnI CGCG 2 cut(s) 58, 110
MwoI GCNNNNNNNGC 3 cut(s) 10, 92, 109
NaeI GCCGGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 148, 180, 214, 287
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 79, 121, 224
PdiI GCCGGC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 80, 252
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 148, 180
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SacI GAGCTC 1 cut(s) 245
SalI GTCGAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 148, 180, 214, 287
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 3 cut(s) 245, 318, 331
SetI ASST 6 cut(s) 126, 164, 192, 245, 263, 279
SgrAI CRCCGGYG 2 cut(s) 66, 323
SmlI CTYRAG 2 cut(s) 191, 297
SmoI CTYRAG 2 cut(s) 191, 297
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 32, 95, 137
SspMI CTAG 1 cut(s) 285
SstI GAGCTC 1 cut(s) 245
StyI CCWWGG 2 cut(s) 75, 310
TaqI TCGA 4 cut(s) 50, 89, 177, 236
TasI AATT 1 cut(s) 43
TfiI GAWTC 2 cut(s) 80, 252
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 150
VneI GTGCAC 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.