Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Forward (+)

39333338 .. 39334631

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG261400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCGGGAGTGGTGGATCTGTTCTTCAGCTCCTCCTCGAATATCAAGCTCGATTTACAGTCGGACGATCGTGATCTTCCTGTAGTAGGCCAGTCGACAAGCTCGGAGAGATTCAACACTTTATCATGGTCCAAGCCCGCTGCTGGATCAATTAGTAACAACTGTTATAGTTGCTTTTTAACACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

62

Amino Acids

6.75

Weight (kDa)

4.85

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	2 cut(s)	5, 138
AclWI	GGATC	2 cut(s)	24, 154
AcuI	CTGAAG	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	86, 143
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	3 cut(s)	30, 49, 102
AluI	AGCT	3 cut(s)	30, 49, 102
AlwI	GGATC	2 cut(s)	24, 154
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 143
Bse1I	ACTGG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	86, 143
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	22, 25
BseXI	GCAGC	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	86, 143
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	16, 67, 73, 146
BspACI	CCGC	2 cut(s)	5, 138
BspANI	GGCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	24, 154
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	4 cut(s)	16, 67, 73, 146
Bst4CI	ACNGT	3 cut(s)	60, 164, 186
BstC8I	GCNNGC	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	19, 70, 76, 149
BstMBI	GATC	4 cut(s)	16, 67, 73, 146
BstMCI	CGRYCG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	5 cut(s)	30, 49, 90, 102, 136
CviKI_1	RGCY	5 cut(s)	30, 49, 90, 102, 136
DpnI	GATC	4 cut(s)	18, 69, 75, 148
DpnII	GATC	4 cut(s)	16, 67, 73, 146
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	129
FaiI	YATR	2 cut(s)	127, 168
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	64, 106
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	96
HpyCH4III	ACNGT	3 cut(s)	60, 164, 186
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	16, 67, 73, 146
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	3 cut(s)	93, 104, 129
Lsp1109I	GCAGC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	18, 69, 75, 148
MboI	GATC	4 cut(s)	16, 67, 73, 146
MboII	GAAGA	2 cut(s)	16, 68
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	43, 46
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	140
NdeII	GATC	4 cut(s)	16, 67, 73, 146
NlaIII	CATG	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	142
Ple19I	CGATCG	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	16, 67, 73, 146
Sau96I	GGNCC	1 cut(s)	129
SetI	ASST	3 cut(s)	32, 51, 104
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	5, 138
TaaI	ACNGT	3 cut(s)	60, 164, 186
TaqI	TCGA	3 cut(s)	38, 51, 95
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.