Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Reverse (-)

25724332 .. 25724832

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG251000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGTCTCCGGCGACAAACCATTCTGTCTCTGCCGGCTTCCAATTGTTTGATTGCGCGTCTTCACCGGCGCACCGTGGAGTATGCTTTGGGAGATCAGGTTCCAAAACCAAACCCTAAAAAGAGCCAGATTCCCAATTTCACCAGATCCATCCAACTATATTTCTTGATTTCTCTGATAGTTGAACTTTGTGTGAACAGATCCGCGTTGATGGCAGTCTTGCAGGACGCGCCGTACATGGTGGTCGGGACGATGGCGGGAACAGTGGATCTGTCATTCAGCTCCTCCACGAATATTGAGATCTTCAAGCTTGAGTTACAGTCAGACGATCGTGATCTTCATGTAGTGGGCGAGTCGACGAGCTCTGAGAGATTCAACAAGTTATCGTGGTTCAAGCTTGCTGCTAGATCAGGCTCTCAAGACTTTAGCCTTGGGCTCATCACCGATGCACTTGTCAATGAGACTATTGATATTTTGAATCCACTTACTCTAATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

166

Amino Acids

18.6

Weight (kDa)

8.66

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	356
AccII	CGCG	3 cut(s)	58, 206, 230
AciI	CCGC	2 cut(s)	204, 257
AclWI	GGATC	3 cut(s)	141, 195, 276
AfaI	GTAC	1 cut(s)	236
AgsI	TTSAA	5 cut(s)	185, 307, 376, 394, 478
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	4 cut(s)	282, 310, 363, 397
AluI	AGCT	4 cut(s)	282, 310, 363, 397
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	11, 33, 455
AlwI	GGATC	3 cut(s)	141, 195, 276
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	3 cut(s)	58, 72, 232
AsuHPI	GGTGA	3 cut(s)	56, 133, 433
BanII	GRGCYC	2 cut(s)	365, 438
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	158, 205, 247
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	3 cut(s)	11, 33, 455
BfaI	CTAG	1 cut(s)	405
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	332, 402
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	75, 430
BsaWI	WCCGGW	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse118I	RCCGGY	2 cut(s)	34, 66
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	75, 430
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	3 cut(s)	58, 206, 230
Bsh1285I	CGRYCG	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	4 cut(s)	10, 35, 67, 496
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	3 cut(s)	11, 33, 455
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	365, 438
Bsp143I	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
BspACI	CCGC	2 cut(s)	204, 257
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	3 cut(s)	58, 206, 230
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	3 cut(s)	141, 195, 276
BsrFI	RCCGGY	2 cut(s)	34, 66
BssAI	RCCGGY	2 cut(s)	34, 66
BssECI	CCNNGG	2 cut(s)	75, 430
BssMI	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	76, 265, 321
BstC8I	GCNNGC	2 cut(s)	36, 399
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	3 cut(s)	58, 206, 230
BstHHI	GCGC	3 cut(s)	58, 72, 232
BstKTI	GATC	8 cut(s)	97, 149, 203, 271, 303, 331, 337, 410
BstMAI	GTCTC	3 cut(s)	11, 33, 455
BstMBI	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 212, 229
BstUI	CGCG	3 cut(s)	58, 206, 230
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	4 cut(s)	146, 200, 268, 300
BstYI	RGATCY	4 cut(s)	146, 200, 268, 300
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	36, 399
CfoI	GCGC	3 cut(s)	58, 72, 232
Cfr10I	RCCGGY	2 cut(s)	34, 66
CseI	GACGC	2 cut(s)	47, 236
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	2 cut(s)	238, 341
CviJI	RGCY	9 cut(s)	38, 126, 282, 310, 363, 397, 414, 429, 436
CviKI_1	RGCY	9 cut(s)	38, 126, 282, 310, 363, 397, 414, 429, 436
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	8 cut(s)	96, 148, 202, 270, 302, 330, 336, 409
DpnII	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	365, 438
Eco53kI	GAGCTC	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	365, 438
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	241, 344
FaiI	YATR	4 cut(s)	84, 160, 239, 342
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	237, 340
FauI	CCCGC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	365, 438
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	3 cut(s)	57, 71, 231
GluI	GCNGC	1 cut(s)	402
HapII	CCGG	4 cut(s)	10, 35, 67, 496
HgaI	GACGC	2 cut(s)	47, 236
HhaI	GCGC	3 cut(s)	58, 72, 232
Hin1II	CATG	2 cut(s)	241, 344
Hin6I	GCGC	3 cut(s)	56, 70, 230
HinP1I	GCGC	3 cut(s)	56, 70, 230
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	2 cut(s)	308, 395
HinfI	GANTC	4 cut(s)	130, 353, 372, 478
HpaII	CCGG	4 cut(s)	10, 35, 67, 496
HphI	GGTGA	3 cut(s)	56, 133, 433
Hpy166II	GTNNAC	2 cut(s)	196, 357
Hpy188I	TCNGA	3 cut(s)	177, 325, 367
Hpy188III	TCNNGA	4 cut(s)	166, 247, 332, 419
Hpy8I	GTNNAC	2 cut(s)	196, 357
Hpy99I	CGWCG	1 cut(s)	361
HpyCH4III	ACNGT	3 cut(s)	76, 265, 321
HpyCH4V	TGCA	2 cut(s)	223, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 212, 229
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	241, 344
HspAI	GCGC	3 cut(s)	56, 70, 230
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	23, 48, 80, 83, 140, 157, 209, 396
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	8 cut(s)	96, 148, 202, 270, 302, 330, 336, 409
MboI	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
MboII	GAAGA	3 cut(s)	53, 295, 329
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	4 cut(s)	146, 200, 268, 300
MhlI	GDGCHC	2 cut(s)	365, 438
MluCI	AATT	2 cut(s)	43, 136
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	34
MspI	CCGG	4 cut(s)	10, 35, 67, 496
MunI	CAATTG	1 cut(s)	43
MvnI	CGCG	3 cut(s)	58, 206, 230
MwoI	GCNNNNNNNGC	3 cut(s)	10, 212, 229
NaeI	GCCGGC	1 cut(s)	36
NdeII	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	241, 344
NlaIV	GGNNCC	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	130, 372, 478
PkrI	GCNGC	1 cut(s)	403
Ple19I	CGATCG	1 cut(s)	331
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	4 cut(s)	146, 200, 268, 300
PvuI	CGATCG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	365
SalI	GTCGAC	1 cut(s)	355
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	8 cut(s)	94, 146, 200, 268, 300, 328, 334, 407
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	365, 438
SetI	ASST	5 cut(s)	102, 284, 312, 365, 399
SfaNI	GCATC	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	311, 417
SmoI	CTYRAG	2 cut(s)	311, 417
Sse9I	AATT	2 cut(s)	43, 136
SsiI	CCGC	2 cut(s)	204, 257
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	76, 265, 321
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	43, 136
TfiI	GAWTC	3 cut(s)	130, 372, 478
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.