Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015768

Physical Location & Seq

Genomic Coordinates Reverse (-)

11406074 .. 11406727

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGTCTGTTGCTCCCACTGGCAGCACTAATGCTGATGCAAACAATCTGCAGCCCAAGAGTGCAGATACACAACCTACCCCGAGTCAAGTTTTTGCTGATCTTGACATGATTGCATTTCTGAAAAACTGGATGTGTCCAATTATGCCAAAACATGTTAGTGAGGTTACTTCTAGGAGTGAGTTGCCATTAATGGTGATCCCATCACTGAGAATTGTAGGAGGTGATGAAAGCATGGGCATGGAAATATCTAACGTGCGCCCTCCTATAATAGGGTACAAAAGAAAAGGGGTGGCTGACCTTGGGTGCTCTGGGAAGCGTTATTTGGCTCTATTTGAACCGAAAGATGTAGAGGTCAAGAAGACAAAGATATGGAAACCCCATGCAGCTTTAGAGCAAGATAATCCTGAGCCAAAAGGGATGGAAGATGGAGATGCAGCTGGGCACGTGGAATTGCATCAGATTGCAGATTTGGATATGGAGGATGCACTGGTATCCTCATCTAAAAGTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.63

Weight (kDa)

5.19

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015768)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006880 RLG00000011720 RLG00000033056
rosa_multiflora	Rmu_co8363351.1_g000001 Rmu_sc0001493.1_g000002 Rmu_sc0001493.1_g000003 Rmu_sc0002219.1_g000021 Rmu_sc0005344.1_g000005 Rmu_sc0007230.1_g000001 Rmu_sc0014815.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151970
rosa_rugosa	Rorug01G0483500
rosa_samantha	Rh2CG394900 Rh3DG198200 Rh3DG224800 Rh7BG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	193
AcvI	CACGTG	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	389, 440
AluI	AGCT	2 cut(s)	389, 440
Alw21I	GWGCWC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	82
ApeKI	GCWGC	4 cut(s)	24, 52, 386, 437
AseI	ATTAAT	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	208, 236
AvaI	CYCGRG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	36, 64, 398, 449
BccI	CCATC	3 cut(s)	211, 415, 422
BciVI	GTATCC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	4 cut(s)	25, 53, 387, 438
BlsI	GCNGC	4 cut(s)	26, 54, 388, 439
BmeT110I	CYCGRG	1 cut(s)	82
BmsI	GCATC	4 cut(s)	28, 424, 466, 475
BpiI	GAAGAC	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	25, 134, 495
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	138, 426, 490
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	200, 399
BseNI	ACTGG	3 cut(s)	25, 134, 495
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	36, 64, 398, 449
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	311, 447
Bsp143I	GATC	2 cut(s)	100, 198
BspCNI	CTCAG	2 cut(s)	201, 400
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	25, 134, 495
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	100, 198
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	209, 408
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	138, 426, 490
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	103, 201
BstMBI	GATC	2 cut(s)	100, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	36, 64, 398, 449
BstV2I	GAAGAC	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	505
BtsCI	GGATG	3 cut(s)	138, 426, 490
BtsIMutI	CAGTG	3 cut(s)	18, 206, 488
CfoI	GCGC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	109, 155, 235, 241, 383
CviJI	RGCY	6 cut(s)	55, 296, 329, 389, 412, 440
CviKI_1	RGCY	6 cut(s)	55, 296, 329, 389, 412, 440
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	209, 408
DpnI	GATC	2 cut(s)	102, 200
DpnII	GATC	2 cut(s)	100, 198
Eco130I	CCWWGG	1 cut(s)	301
Eco72I	CACGTG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	5 cut(s)	112, 158, 238, 244, 386
FaiI	YATR	9 cut(s)	110, 146, 156, 236, 242, 269, 373, 384, 479
FatI	CATG	5 cut(s)	108, 154, 234, 240, 382
Fnu4HI	GCNGC	4 cut(s)	25, 53, 387, 438
FokI	GGATG	3 cut(s)	145, 433, 497
Fsp4HI	GCNGC	4 cut(s)	25, 53, 387, 438
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	4 cut(s)	25, 53, 387, 438
GsaI	CCCAGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	112, 158, 238, 244, 386
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	2 cut(s)	208, 236
Hpy188I	TCNGA	2 cut(s)	123, 462
Hpy188III	TCNNGA	3 cut(s)	104, 358, 407
HpyCH4IV	ACGT	2 cut(s)	255, 447
HpyCH4V	TGCA	9 cut(s)	41, 52, 65, 116, 386, 437, 457, 467, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	209, 408
HpySE526I	ACGT	2 cut(s)	255, 447
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	112, 158, 238, 244, 386
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	100, 198
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	6, 115, 297, 420, 426, 476
Lsp1109I	GCAGC	4 cut(s)	36, 64, 398, 449
LweI	GCATC	4 cut(s)	28, 424, 466, 475
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	255, 447
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	102, 200
MboI	GATC	2 cut(s)	100, 198
MboII	GAAGA	2 cut(s)	373, 437
MhlI	GDGCHC	2 cut(s)	311, 447
MluCI	AATT	3 cut(s)	141, 213, 452
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	157, 215, 273, 346, 475, 508
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	2 cut(s)	159, 239
MspA1I	CMGCKG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	100, 198
NlaIII	CATG	5 cut(s)	112, 158, 238, 244, 386
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	26, 54, 388, 439
PleI	GAGTC	1 cut(s)	93
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	448
PscI	ACATGT	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	191
PspCI	CACGTG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	159, 239
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	4 cut(s)	25, 53, 387, 438
Sau3AI	GATC	2 cut(s)	100, 198
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	311, 447
SetI	ASST	9 cut(s)	79, 168, 226, 258, 303, 357, 391, 442, 450
SfaNI	GCATC	4 cut(s)	28, 424, 466, 475
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	159, 239
Sse9I	AATT	3 cut(s)	141, 213, 452
SspMI	CTAG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	301
TaiI	ACGT	2 cut(s)	258, 450
TasI	AATT	3 cut(s)	141, 213, 452
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	3 cut(s)	25, 213, 495
TseI	GCWGC	4 cut(s)	24, 52, 386, 437
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	25, 213, 495
VspI	ATTAAT	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.