Rmu_sc0014815.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014815.1
OG0015768
Physical Location & Seq
Reverse (-)
976 .. 1389
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014815.1_g000002.1.cds

Sequence Viewer

Length: 414 bp
atgtttcctggtttcagaggaatgatctcttcaatctggaggatttgttcggggttaacgattcaagatgtgggggatagatttgtgtttcaatttgatcgagaagctgatcgcaacaaaatattgcatggaggcccgtggttttataggaataccatgctggtgttgggtgggtgtgatggtatagggccggtggcggaagtctctctcaatcttctagagacctgggtcgttgttatgggtctcccactggtgcttcggaacaagaaggcgctagggttggttggggcgtccatcgatcgtgttgtccgctttgaccatacagcccttaaccgaaaggaagaggagcaacgtatccatcttgtacttgacttgcgtgataggattcggggttggatggtgtttgagttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

137

Amino Acids

15.72

Weight (kDa)

8.77

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 197, 310
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 366
AgsI TTSAA 3 cut(s) 33, 65, 92
AjnI CCWGG 2 cut(s) 7, 224
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 3 cut(s) 208, 215, 248
AoxI GGCC 2 cut(s) 133, 188
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 134, 188
BccI CCATC 4 cut(s) 173, 302, 366, 391
BciT130I CCWGG 2 cut(s) 9, 226
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 208, 215, 248
BfaI CTAG 2 cut(s) 218, 275
BfoI RGCGCY 1 cut(s) 275
BfuI GTATCC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 9, 226
BmgT120I GGNCC 2 cut(s) 134, 188
BmrFI CCNGG 2 cut(s) 9, 226
BoxI GACNNNNGTC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 2 cut(s) 215, 248
BsaJI CCNNGG 2 cut(s) 137, 225
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 9, 226
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 137, 225
BseGI GGATG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 359
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 135, 190
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 208, 215, 248
BsnI GGCC 2 cut(s) 135, 190
Bso31I GGTCTC 2 cut(s) 215, 248
Bsp143I GATC 4 cut(s) 24, 97, 109, 298
BspACI CCGC 2 cut(s) 197, 310
BspANI GGCC 2 cut(s) 135, 190
BspDI ATCGAT 1 cut(s) 297
BspTNI GGTCTC 2 cut(s) 215, 248
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 137, 225
BssMI GATC 4 cut(s) 24, 97, 109, 298
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 9, 226
Bst6I CTCTTC 2 cut(s) 34, 336
BstACI GRCGYC 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 4 cut(s) 27, 100, 112, 301
BstMAI GTCTC 3 cut(s) 208, 215, 248
BstMBI GATC 4 cut(s) 24, 97, 109, 298
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 2 cut(s) 9, 226
BstPAI GACNNNNGTC 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 7, 224
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 135, 190
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 134, 188
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 365
CviAII CATG 2 cut(s) 128, 157
CviJI RGCY 4 cut(s) 107, 135, 190, 326
CviKI_1 RGCY 4 cut(s) 107, 135, 190, 326
CviQI GTAC 1 cut(s) 365
DpnI GATC 4 cut(s) 26, 99, 111, 300
DpnII GATC 4 cut(s) 24, 97, 109, 298
Eam1104I CTCTTC 2 cut(s) 34, 336
EarI CTCTTC 2 cut(s) 34, 336
EciI GGCGGA 1 cut(s) 212
Eco31I GGTCTC 2 cut(s) 215, 248
EcoRII CCWGG 2 cut(s) 7, 224
FaeI CATG 2 cut(s) 131, 160
FaiI YATR 6 cut(s) 129, 147, 158, 185, 239, 321
FatI CATG 2 cut(s) 127, 156
FokI GGATG 1 cut(s) 409
FspBI CTAG 2 cut(s) 218, 275
GlaI GCGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 2 cut(s) 135, 190
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 2 cut(s) 131, 160
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 61, 385
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 17, 261
Hpy188III TCNNGA 4 cut(s) 37, 65, 101, 218
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 352
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 131, 160
HspAI GCGC 1 cut(s) 272
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 24, 97, 109, 298
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 7 cut(s) 21, 22, 146, 204, 211, 236, 238
MaeI CTAG 2 cut(s) 218, 275
MaeII ACGT 1 cut(s) 352
MalI GATC 4 cut(s) 26, 99, 111, 300
MboI GATC 4 cut(s) 24, 97, 109, 298
MboII GAAGA 3 cut(s) 21, 206, 353
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 11, 33, 125, 337
MseI TTAA 2 cut(s) 56, 330
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 9, 226
MvaI CCWGG 2 cut(s) 9, 226
NdeII GATC 4 cut(s) 24, 97, 109, 298
NlaIII CATG 2 cut(s) 131, 160
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 2 cut(s) 61, 385
Ple19I CGATCG 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 7, 224
PspGI CCWGG 2 cut(s) 7, 224
PspPI GGNCC 2 cut(s) 134, 188
PvuI CGATCG 1 cut(s) 301
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 56, 330
Sau3AI GATC 4 cut(s) 24, 97, 109, 298
Sau96I GGNCC 2 cut(s) 134, 188
ScrFI CCNGG 2 cut(s) 9, 226
SetI ASST 3 cut(s) 109, 227, 355
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 197, 310
SspI AATATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 218, 275
StyD4I CCNGG 2 cut(s) 7, 224
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 100, 297
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 2 cut(s) 61, 385
Tru1I TTAA 2 cut(s) 56, 330
Tru9I TTAA 2 cut(s) 56, 330
TscAI CASTG 1 cut(s) 255
TspRI CASTG 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 218, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.