Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015768

Physical Location & Seq

Genomic Coordinates Forward (+)

22741768 .. 22744214

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTGGGCTCTCTTTAGTGTCAGAAGGGCAAGAAAGTAGGGAGAACAACGGAGGTACGGTGCCTGGTAGTAGCATGGGACTGGTGGAGGAGGTGTTGCCCTTGATGGGTGATGTGGTGGTATCAGAATCGATAGGAACTGCAATGGTGGTAGTCCAACCGCCACTGGAAGTCTGTGCATCACTTCCCTCCACTTTTCTTGGAGCCACCGATTCAGTTGAGAGGGCTTTTGCATGTTTTGATATGGTTGAGTTTCTGAAGAATTGGGCTGTGCAGAGAAATACGAGTAAGGGGCCCAGGAATGGTAGTGCGGAGGTACCACCATTGGTGGTGGCTCAACCTCCGCGCTCGTGTGGAGGTAATGAAGTGATGGTGCTGCAAGATTCTCGTGTGCAGCCTTTACTTGGGACTAAAAGGAAGGCGGTGGATATTTGGGGTAGAGTTGGAATATGTGATGACCCATTTGATGCAGACATGAGATTGAAGTGCAAAAGTTCAATGGCTTTGAGGGTTGACATAGATACCAAATACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.0

Weight (kDa)

4.81

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015768)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006880 RLG00000011720 RLG00000033056
rosa_multiflora	Rmu_co8363351.1_g000001 Rmu_sc0001493.1_g000002 Rmu_sc0001493.1_g000003 Rmu_sc0002219.1_g000021 Rmu_sc0005344.1_g000005 Rmu_sc0007230.1_g000001 Rmu_sc0014815.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151970
rosa_rugosa	Rorug01G0483500
rosa_samantha	Rh2CG394900 Rh3DG198200 Rh3DG224800 Rh7BG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	2 cut(s)	61, 316
AccII	CGCG	1 cut(s)	346
AciI	CCGC	4 cut(s)	161, 311, 344, 422
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	58, 318
AfiI	CCNNNNNNNGG	3 cut(s)	107, 302, 404
AgsI	TTSAA	2 cut(s)	484, 498
AjnI	CCWGG	2 cut(s)	64, 296
AoxI	GGCC	1 cut(s)	293
ApaI	GGGCCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	376, 394
Asp718I	GGTACC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	293, 294
AsuHPI	GGTGA	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	2 cut(s)	61, 316
BanII	GRGCYC	2 cut(s)	12, 297
BauI	CACGAG	2 cut(s)	349, 387
BbvI	GCAGC	2 cut(s)	363, 406
BccI	CCATC	2 cut(s)	100, 364
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	66, 298
BisI	GCNGC	2 cut(s)	377, 395
BlsI	GCNGC	2 cut(s)	378, 396
Bme1390I	CCNGG	2 cut(s)	66, 298
BmgT120I	GGNCC	2 cut(s)	293, 294
BmiI	GGNNCC	5 cut(s)	63, 205, 294, 295, 318
BmrFI	CCNGG	2 cut(s)	66, 298
BmsI	GCATC	2 cut(s)	188, 457
Bsa29I	ATCGAT	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 302, 404
Bse1I	ACTGG	2 cut(s)	87, 171
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	66, 298
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	107, 302, 404
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	87, 171
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	363, 406
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	2 cut(s)	293, 413
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	2 cut(s)	61, 316
BshVI	ATCGAT	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	93, 421
BslI	CCNNNNNNNGG	3 cut(s)	107, 302, 404
BsmFI	GGGAC	2 cut(s)	93, 421
BsnI	GGCC	1 cut(s)	295
Bsp120I	GGGCCC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	12, 297
BspACI	CCGC	4 cut(s)	161, 311, 344, 422
BspANI	GGCC	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	5 cut(s)	63, 205, 294, 295, 318
BspT107I	GGYRCC	2 cut(s)	61, 316
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	87, 171
BssECI	CCNNGG	1 cut(s)	296
BssSI	CACGAG	2 cut(s)	349, 387
Bst2BI	CACGAG	2 cut(s)	349, 387
Bst2UI	CCWGG	2 cut(s)	66, 298
Bst4CI	ACNGT	2 cut(s)	61, 533
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	66, 298
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	64, 296
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	363, 406
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	293, 294
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	57, 317
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	3 cut(s)	76, 234, 475
CviJI	RGCY	9 cut(s)	5, 10, 206, 227, 269, 295, 335, 397, 503
CviKI_1	RGCY	9 cut(s)	5, 10, 206, 227, 269, 295, 335, 397, 503
CviQI	GTAC	2 cut(s)	57, 317
Eco24I	GRGCYC	2 cut(s)	12, 297
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	64, 296
EcoT38I	GRGCYC	2 cut(s)	12, 297
FaeI	CATG	3 cut(s)	79, 237, 478
FaiI	YATR	6 cut(s)	77, 235, 245, 451, 476, 518
FaqI	GGGAC	2 cut(s)	93, 421
FatI	CATG	3 cut(s)	75, 233, 474
Fnu4HI	GCNGC	2 cut(s)	377, 395
FriOI	GRGCYC	2 cut(s)	12, 297
Fsp4HI	GCNGC	2 cut(s)	377, 395
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	377, 395
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	79, 237, 478
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	128, 212, 383
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	25, 127, 258
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	20, 412
HpyCH4III	ACNGT	2 cut(s)	61, 533
HpyCH4V	TGCA	8 cut(s)	143, 179, 233, 274, 379, 394, 470, 489
Hsp92II	CATG	3 cut(s)	79, 237, 478
HspAI	GCGC	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	6 cut(s)	51, 68, 78, 152, 283, 310
Lsp1109I	GCAGC	2 cut(s)	363, 406
LweI	GCATC	2 cut(s)	188, 457
MboII	GAAGA	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	12, 297
MluCI	AATT	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	181, 424
MnlI	CCTC	9 cut(s)	47, 82, 85, 199, 216, 307, 350, 351, 501
MspR9I	CCNGG	2 cut(s)	66, 298
MvaI	CCWGG	2 cut(s)	66, 298
MvnI	CGCG	1 cut(s)	346
NlaIII	CATG	3 cut(s)	79, 237, 478
NlaIV	GGNNCC	5 cut(s)	63, 205, 294, 295, 318
NspI	RCATGY	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	128, 212, 383
PkrI	GCNGC	2 cut(s)	378, 396
Psp6I	CCWGG	2 cut(s)	64, 296
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	64, 296
PspN4I	GGNNCC	5 cut(s)	63, 205, 294, 295, 318
PspOMI	GGGCCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	293, 294
RsaI	GTAC	2 cut(s)	58, 318
RsaNI	GTAC	2 cut(s)	57, 317
SatI	GCNGC	2 cut(s)	377, 395
Sau96I	GGNCC	2 cut(s)	293, 294
ScrFI	CCNGG	2 cut(s)	66, 298
SduI	GDGCHC	2 cut(s)	12, 297
SetI	ASST	5 cut(s)	58, 96, 318, 343, 361
SfaNI	GCATC	2 cut(s)	188, 457
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	161, 311, 344, 422
StyD4I	CCNGG	2 cut(s)	64, 296
TaaI	ACNGT	2 cut(s)	61, 533
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	128, 212, 383
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	376, 394
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	171
XceI	RCATGY	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.