Rorug01G0483500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015768
Physical Location & Seq
Forward (+)
57060999 .. 57062515
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0483500.1

Sequence Viewer

Length: 597 bp
ATGGTGGCCGGAGGTAGGCCGGGGTGTGCAGGGCTGCTGCAGGGGTTGTGCGAGGCTGCTTCAGGGGTTGTGCGAGGCTGCTGCAGGGTGCTTGCGGAGGCTGTGCAAGGCTCGTGCAGGGGCTGTCGGCAGGTCTCGGCAGGGGCCTGTGCGGGGCTGTCGGCAGGTCTCGACAGGGGCCTGTGTGGGGCTGTCGGCAGGTCTCGGCAGGGGCAGGCACACGTCTCGGCAGAACTCGGCAGGGGGCTCGCAGGGGCTTCGACAAGTGCTCGGCAGCTGCTCGGCAGACGTGCGGAGGGCAGGCACAGGGCAAGCTCAAGGCAGGGGCCGGTTCCGGTGGTTCCGCCGCCGGTTCTGGGCTCCTTGGGATTAGGGCTTCGATATATAGAGGTGAAGACAGTGAAAGCACAAATATGGGACACGGCAGATCAGGAGAGGTACCGAGCCATTACCAATGCTTACTACAGAGGTGCTGTTGGTGCTCTATTGGTCTATGACATAACCAAAAGGCAAACATTTGACAATGTGACGATCGAGGTGGCTCCGCGAACTCAGAGACCATGCAAACTCAAATATTGTCATAATGATGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

20.79

Weight (kDa)

9.91

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 129 - 179 1e-16 Ras family
Roc PF08477 130 - 176 4.7e-10 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 121, 155, 189
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 438
AccII CGCG 1 cut(s) 547
AciI CCGC 6 cut(s) 95, 152, 293, 344, 347, 545
AcoI YGGCCR 2 cut(s) 6, 589
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 4 cut(s) 15, 153, 187, 356
AflIII ACRYGT 1 cut(s) 220
AjiI CACGTC 2 cut(s) 223, 290
AluBI AGCT 2 cut(s) 277, 315
AluI AGCT 2 cut(s) 277, 315
Alw21I GWGCWC 2 cut(s) 271, 484
Alw26I GTCTC 5 cut(s) 139, 173, 207, 229, 550
AlwNI CAGNNNCTG 1 cut(s) 123
AoxI GGCC 6 cut(s) 6, 17, 144, 178, 326, 589
ApeKI GCWGC 7 cut(s) 34, 37, 56, 78, 81, 274, 277
Asp718I GGTACC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 144, 178, 326
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 403
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 249, 362
BauI CACGAG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 271, 484
BbvI GCAGC 7 cut(s) 21, 24, 43, 65, 68, 264, 286
BccI CCATC 1 cut(s) 581
BceAI ACGGC 1 cut(s) 438
BcgI CGANNNNNNTGC 8 cut(s) 63, 97, 207, 229, 240, 241, 263, 274
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 139, 173, 207, 229, 550
BfmI CTRYAG 3 cut(s) 38, 82, 463
BfuAI ACCTGC 3 cut(s) 121, 155, 189
BisI GCNGC 8 cut(s) 35, 38, 57, 79, 82, 275, 278, 347
BlsI GCNGC 8 cut(s) 36, 39, 58, 80, 83, 276, 279, 348
Bme1390I CCNGG 1 cut(s) 21
BmgBI CACGTC 2 cut(s) 223, 290
BmgT120I GGNCC 3 cut(s) 144, 178, 326
BmiI GGNNCC 8 cut(s) 145, 179, 327, 333, 342, 361, 440, 543
BmrFI CCNGG 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 4 cut(s) 139, 173, 207, 550
BsaJI CCNNGG 2 cut(s) 20, 363
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 153, 187, 356
Bse118I RCCGGY 3 cut(s) 328, 349, 591
BseDI CCNNGG 2 cut(s) 20, 363
BseLI CCNNNNNNNGG 4 cut(s) 15, 153, 187, 356
BseMII CTCAG 1 cut(s) 566
BseXI GCAGC 7 cut(s) 21, 24, 43, 65, 68, 264, 286
BsgI GTGCAG 2 cut(s) 48, 136
Bsh1236I CGCG 1 cut(s) 547
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 6 cut(s) 8, 19, 146, 180, 328, 591
BshNI GGYRCC 1 cut(s) 438
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 2 cut(s) 271, 484
BsiSI CCGG 6 cut(s) 9, 20, 329, 335, 350, 592
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 15, 153, 187, 356
BsmAI GTCTC 5 cut(s) 139, 173, 207, 229, 550
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 6 cut(s) 8, 19, 146, 180, 328, 591
Bso31I GGTCTC 4 cut(s) 139, 173, 207, 550
Bsp1286I GDGCHC 4 cut(s) 249, 271, 362, 484
Bsp143I GATC 2 cut(s) 427, 531
BspACI CCGC 6 cut(s) 95, 152, 293, 344, 347, 545
BspANI GGCC 6 cut(s) 8, 19, 146, 180, 328, 591
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 8 cut(s) 145, 179, 327, 333, 342, 361, 440, 543
BspMAI CTGCAG 2 cut(s) 42, 86
BspMI ACCTGC 3 cut(s) 121, 155, 189
BspT107I GGYRCC 1 cut(s) 438
BspTNI GGTCTC 4 cut(s) 139, 173, 207, 550
BsrFI RCCGGY 3 cut(s) 328, 349, 591
BssAI RCCGGY 3 cut(s) 328, 349, 591
BssECI CCNNGG 2 cut(s) 20, 363
BssMI GATC 2 cut(s) 427, 531
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 93, 216, 249, 302, 313
BstDEI CTNAG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 547
BstKTI GATC 2 cut(s) 430, 534
BstMAI GTCTC 5 cut(s) 139, 173, 207, 229, 550
BstMBI GATC 2 cut(s) 427, 531
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 3 cut(s) 38, 82, 463
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 7 cut(s) 21, 24, 43, 65, 68, 264, 286
BstV2I GAAGAC 1 cut(s) 401
BsuRI GGCC 6 cut(s) 8, 19, 146, 180, 328, 591
BtrI CACGTC 2 cut(s) 223, 290
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 3 cut(s) 121, 155, 189
Cac8I GCNNGC 5 cut(s) 93, 216, 249, 302, 313
CaiI CAGNNNCTG 1 cut(s) 123
Cfr10I RCCGGY 3 cut(s) 328, 349, 591
Cfr13I GGNCC 3 cut(s) 144, 178, 326
Csp6I GTAC 1 cut(s) 439
CviAII CATG 1 cut(s) 561
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 552
DpnI GATC 2 cut(s) 429, 533
DpnII GATC 2 cut(s) 427, 531
EaeI YGGCCR 2 cut(s) 6, 589
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 249, 362
Eco31I GGTCTC 4 cut(s) 139, 173, 207, 550
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 144, 178
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 2 cut(s) 249, 362
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 1 cut(s) 564
FaiI YATR 7 cut(s) 384, 386, 415, 495, 500, 562, 582
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 560
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 35, 38, 57, 79, 82, 275, 278, 347
FriOI GRGCYC 2 cut(s) 249, 362
Fsp4HI GCNGC 8 cut(s) 35, 38, 57, 79, 82, 275, 278, 347
GluI GCNGC 8 cut(s) 35, 38, 57, 79, 82, 275, 278, 347
HaeIII GGCC 6 cut(s) 8, 19, 146, 180, 328, 591
HapII CCGG 6 cut(s) 9, 20, 329, 335, 350, 592
Hin1II CATG 1 cut(s) 564
HpaII CCGG 6 cut(s) 9, 20, 329, 335, 350, 592
HphI GGTGA 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 2 cut(s) 170, 431
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 222, 289
HpyCH4V TGCA 6 cut(s) 29, 40, 84, 106, 117, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 222, 289
Hsp92II CATG 1 cut(s) 564
KpnI GGTACC 1 cut(s) 442
Kzo9I GATC 2 cut(s) 427, 531
LmnI GCTCC 2 cut(s) 365, 547
Lsp1109I GCAGC 7 cut(s) 21, 24, 43, 65, 68, 264, 286
MaeII ACGT 2 cut(s) 222, 289
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 429, 533
MboI GATC 2 cut(s) 427, 531
MboII GAAGA 1 cut(s) 406
MhlI GDGCHC 4 cut(s) 249, 271, 362, 484
MnlI CCTC 9 cut(s) 5, 46, 68, 91, 289, 382, 429, 461, 529
MslI CAYNNNNRTG 2 cut(s) 412, 585
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 6 cut(s) 9, 20, 329, 335, 350, 592
MspR9I CCNGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 479
NciI CCSGG 1 cut(s) 21
NdeII GATC 2 cut(s) 427, 531
NlaIII CATG 1 cut(s) 564
NlaIV GGNNCC 8 cut(s) 145, 179, 327, 333, 342, 361, 440, 543
NmeAIII GCCGAG 6 cut(s) 116, 184, 206, 216, 250, 261
NmuCI GTSAC 1 cut(s) 526
PkrI GCNGC 8 cut(s) 36, 39, 58, 80, 83, 276, 279, 348
Ple19I CGATCG 1 cut(s) 534
PspN4I GGNNCC 8 cut(s) 145, 179, 327, 333, 342, 361, 440, 543
PspPI GGNCC 3 cut(s) 144, 178, 326
PstI CTGCAG 2 cut(s) 42, 86
PstNI CAGNNNCTG 1 cut(s) 123
PvuI CGATCG 1 cut(s) 534
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 412, 585
SatI GCNGC 8 cut(s) 35, 38, 57, 79, 82, 275, 278, 347
Sau3AI GATC 2 cut(s) 427, 531
Sau96I GGNCC 3 cut(s) 144, 178, 326
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 4 cut(s) 249, 271, 362, 484
SfcI CTRYAG 3 cut(s) 38, 82, 463
SmiMI CAYNNNNRTG 2 cut(s) 412, 585
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
SsiI CCGC 6 cut(s) 95, 152, 293, 344, 347, 545
SspI AATATT 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 225, 292
TaqI TCGA 4 cut(s) 171, 260, 379, 534
TauI GCSGC 1 cut(s) 349
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 7 cut(s) 34, 37, 56, 78, 81, 274, 277
Tsp45I GTSAC 1 cut(s) 526
TspRI CASTG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.