Rh3DG224800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015768
Physical Location & Seq
Forward (+)
21140752 .. 21141476
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG224800.1

Sequence Viewer

Length: 411 bp
ATGCCGGGTAATAGCACGGGACTGGTGGAGGAGGTGTTGCCCTTGATGGGTGATATGGTGGTATCGGAATCGCTAGGAACTGAAATGGTGGTAGTCCAACAGCCACAGGAAGTCCATGCATCACTTCCCTCCAATTTTCTTGGAGCCACAGGTGCTATTGAAAAGGCTTTTGCAGGTTTTAATATGGCTGAGTTTCTGAAGAATTGGGCTATGCAGAGTAACAAGAGTAAGAAGCTTGGGGATGGCAGTGGGGAGGTACCACCGTTGGTGGTGGCTCAACCTCCACGCTCGCGTGGTGGTAATGAAGTGATGGTGCTGCAAGACTCTCGGGAGGATGAGGCTATGGAGCGGATGAATGCAGGTTCAAATGATGGGGGTGCTAGGGCATCCTCCTCTACTAGCACTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.28

Weight (kDa)

4.61

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 164, 350
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 1 cut(s) 292
AciI CCGC 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 161, 366
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BanI GGYRCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 303
BccI CCATC 4 cut(s) 40, 236, 304, 365
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BcnI CCSGG 1 cut(s) 6
BfaI CTAG 3 cut(s) 74, 381, 399
BfuAI ACCTGC 2 cut(s) 164, 350
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 145, 258
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 128, 395
BpuMI CCSGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 4 cut(s) 247, 340, 357, 386
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 44, 382
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 327
BspACI CCGC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 145, 258
BspMI ACCTGC 2 cut(s) 164, 350
BspT107I GGYRCC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 4 cut(s) 247, 340, 357, 386
BstFNI CGCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 303
BtsCI GGATG 4 cut(s) 247, 340, 357, 386
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 2 cut(s) 164, 350
Cac8I GCNNGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 116
CviJI RGCY 8 cut(s) 103, 146, 167, 188, 209, 235, 275, 341
CviKI_1 RGCY 8 cut(s) 103, 146, 167, 188, 209, 235, 275, 341
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 1 cut(s) 119
FaiI YATR 5 cut(s) 56, 117, 185, 212, 344
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 4 cut(s) 254, 347, 364, 373
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 3 cut(s) 74, 381, 399
GluI GCNGC 1 cut(s) 317
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 68, 323
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 67, 198
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 119, 173, 214, 319, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 119
KpnI GGTACC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 143, 346
LpnPI CCDG 6 cut(s) 8, 18, 92, 135, 159, 345
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 128, 395
MaeI CTAG 3 cut(s) 74, 381, 399
MaeIII GTNAC 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 349
MboII GAAGA 1 cut(s) 211
MluCI AATT 2 cut(s) 133, 202
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 9 cut(s) 22, 25, 139, 247, 291, 325, 331, 400, 403
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 361
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 6
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 145, 258
NsiI ATGCAT 1 cut(s) 121
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 145, 258
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 317
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 6
SetI ASST 7 cut(s) 36, 154, 178, 237, 258, 283, 364
SfaNI GCATC 2 cut(s) 128, 395
Sse9I AATT 2 cut(s) 133, 202
SsiI CCGC 1 cut(s) 349
SspMI CTAG 3 cut(s) 74, 381, 399
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 264
TasI AATT 2 cut(s) 133, 202
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 318, 368
TspRI CASTG 1 cut(s) 253
XspI CTAG 3 cut(s) 74, 381, 399
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.