Rmu_co8363351.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363351.1
OG0015768
Physical Location & Seq
Reverse (-)
156 .. 977
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363351.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
atgtttcctggtttcaaaggaacgatctcttcaatctggaggattcgttcggggttaacgattcaagatgtgggggatagatttgtgtttcaatttgatcgagaagctgatcgcaacaaaatattgcatggaggtccgtggttttataggaataccatgctggtgttgcgtgggtatgatggtatagggccggtggcggaagtctctctcaatcttctggagacctgggtcgttgttaagggtctcccactggtgctccagaacaagaaggccctagggttggttggggcgtccattggtcgtgttgtctgctttgaccagatagcccttaactggaaggaagaggagcaacgtatctgtcttgtacttgacgtgcgtgataggattcggggttggatggtgtttgagttttggccggtggtggtaccggagttgacgttggtgtacgagaaggcgacggctatggctggactctctctaatgtcagaagggcaaggaagtagggagaacaacggaggtactatgccgggtaatagcacgggactggtgaaggaggtgttgtccttgatgggtgatatggtggtatcagaatcgcaaggaactgaaatggtggtagtccaaccgccacaggaagtccatgcatcacttccctccaattttcttggagccacaggtgctattgaaaaggtttttgcaggttttaatatggctgagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

239

Amino Acids

26.38

Weight (kDa)

5.34

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 686
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AciI CCGC 2 cut(s) 197, 623
AcoI YGGCCR 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 4 cut(s) 366, 426, 446, 520
AfiI CCNNNNNNNGG 2 cut(s) 280, 333
AgsI TTSAA 5 cut(s) 16, 33, 65, 92, 683
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 2 cut(s) 7, 224
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 3 cut(s) 208, 215, 248
AoxI GGCC 3 cut(s) 188, 270, 413
Asp718I GGTACC 1 cut(s) 424
AspA2I CCTAGG 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 134, 188, 271
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 559, 584
AvaII GGWCC 1 cut(s) 134
AvrII CCTAGG 1 cut(s) 274
BaeI ACNNNNGTAYC 2 cut(s) 416, 449
BanI GGYRCC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 3 cut(s) 173, 391, 562
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 2 cut(s) 9, 226
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 3 cut(s) 208, 215, 248
BfaI CTAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 686
BlnI CCTAGG 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 9, 226, 528
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 3 cut(s) 134, 188, 271
BmiI GGNNCC 2 cut(s) 426, 667
BmrFI CCNGG 3 cut(s) 9, 226, 528
BmsI GCATC 1 cut(s) 650
BoxI GACNNNNGTC 1 cut(s) 227
BpmI CTGGAG 3 cut(s) 58, 239, 242
BpuMI CCSGG 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 2 cut(s) 215, 248
BsaJI CCNNGG 3 cut(s) 137, 225, 274
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 8 cut(s) 31, 61, 240, 270, 422, 452, 545, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 333
Bse118I RCCGGY 2 cut(s) 190, 415
Bse1I ACTGG 3 cut(s) 255, 338, 549
BseBI CCWGG 2 cut(s) 9, 226
BseDI CCNNGG 3 cut(s) 137, 225, 274
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 280, 333
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 3 cut(s) 255, 338, 549
BseRI GAGGAG 1 cut(s) 359
BshFI GGCC 3 cut(s) 190, 272, 415
BshNI GGYRCC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 4 cut(s) 191, 416, 428, 527
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 280, 333
BsmAI GTCTC 3 cut(s) 208, 215, 248
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 190, 272, 415
Bso31I GGTCTC 2 cut(s) 215, 248
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 24, 97, 109
BspACI CCGC 2 cut(s) 197, 623
BspANI GGCC 3 cut(s) 190, 272, 415
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 426, 667
BspMI ACCTGC 1 cut(s) 686
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 2 cut(s) 215, 248
BsrFI RCCGGY 2 cut(s) 190, 415
BsrI ACTGG 3 cut(s) 255, 338, 549
BssAI RCCGGY 2 cut(s) 190, 415
BssECI CCNNGG 3 cut(s) 137, 225, 274
BssMI GATC 3 cut(s) 24, 97, 109
BssNI GRCGYC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 9, 226
Bst6I CTCTTC 2 cut(s) 34, 336
BstACI GRCGYC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 711
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 3 cut(s) 27, 100, 112
BstMAI GTCTC 3 cut(s) 208, 215, 248
BstMBI GATC 3 cut(s) 24, 97, 109
BstMWI GCNNNNNNNGC 2 cut(s) 166, 674
BstNI CCWGG 2 cut(s) 9, 226
BstPAI GACNNNNGTC 1 cut(s) 227
BstSCI CCNGG 3 cut(s) 7, 224, 526
BsuRI GGCC 3 cut(s) 190, 272, 415
BtgI CCRYGG 1 cut(s) 137
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 686
Cfr10I RCCGGY 2 cut(s) 190, 415
Cfr13I GGNCC 3 cut(s) 134, 188, 271
CseI GACGC 1 cut(s) 279
Csp6I GTAC 4 cut(s) 365, 425, 445, 519
CviAII CATG 3 cut(s) 128, 157, 638
CviJI RGCY 9 cut(s) 107, 190, 272, 326, 415, 461, 467, 668, 710
CviKI_1 RGCY 9 cut(s) 107, 190, 272, 326, 415, 461, 467, 668, 710
CviQI GTAC 4 cut(s) 365, 425, 445, 519
DdeI CTNAG 1 cut(s) 711
DpnI GATC 3 cut(s) 26, 99, 111
DpnII GATC 3 cut(s) 24, 97, 109
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 2 cut(s) 34, 336
EarI CTCTTC 2 cut(s) 34, 336
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 2 cut(s) 215, 248
Eco47I GGWCC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 7, 224
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 131, 160, 641
FaqI GGGAC 1 cut(s) 555
FatI CATG 3 cut(s) 127, 156, 637
FokI GGATG 1 cut(s) 409
FspBI CTAG 1 cut(s) 275
GsuI CTGGAG 3 cut(s) 58, 239, 242
HaeIII GGCC 3 cut(s) 190, 272, 415
HapII CCGG 4 cut(s) 191, 416, 428, 527
HgaI GACGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 3 cut(s) 131, 160, 641
HincII GTYRAC 2 cut(s) 57, 435
HindII GTYRAC 2 cut(s) 57, 435
HinfI GANTC 5 cut(s) 43, 61, 385, 471, 590
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 4 cut(s) 191, 416, 428, 527
HphI GGTGA 2 cut(s) 559, 584
Hpy166II GTNNAC 3 cut(s) 57, 435, 445
Hpy188I TCNGA 2 cut(s) 487, 589
Hpy188III TCNNGA 5 cut(s) 37, 65, 101, 218, 259
Hpy8I GTNNAC 3 cut(s) 57, 435, 445
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 5 cut(s) 262, 331, 445, 482, 544
HpyCH4IV ACGT 3 cut(s) 352, 372, 437
HpyCH4V TGCA 3 cut(s) 127, 641, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 674
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 3 cut(s) 352, 372, 437
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 3 cut(s) 131, 160, 641
KpnI GGTACC 1 cut(s) 428
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 24, 97, 109
LmnI GCTCC 3 cut(s) 261, 346, 665
LweI GCATC 1 cut(s) 650
MaeI CTAG 1 cut(s) 275
MaeII ACGT 3 cut(s) 352, 372, 437
MalI GATC 3 cut(s) 26, 99, 111
MboI GATC 3 cut(s) 24, 97, 109
MboII GAAGA 3 cut(s) 21, 206, 353
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 92, 655
MlyI GAGTC 1 cut(s) 465
MmeI TCCRAC 2 cut(s) 374, 643
MnlI CCTC 6 cut(s) 33, 125, 337, 509, 547, 661
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 4 cut(s) 56, 237, 330, 702
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 4 cut(s) 191, 416, 428, 527
MspR9I CCNGG 3 cut(s) 9, 226, 528
MvaI CCWGG 2 cut(s) 9, 226
MwoI GCNNNNNNNGC 2 cut(s) 166, 674
NciI CCSGG 1 cut(s) 528
NdeII GATC 3 cut(s) 24, 97, 109
NlaIII CATG 3 cut(s) 131, 160, 641
NlaIV GGNNCC 2 cut(s) 426, 667
NsiI ATGCAT 1 cut(s) 643
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 4 cut(s) 43, 61, 385, 590
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 7, 224
PspGI CCWGG 2 cut(s) 7, 224
PspN4I GGNNCC 2 cut(s) 426, 667
PspPI GGNCC 3 cut(s) 134, 188, 271
RsaI GTAC 4 cut(s) 366, 426, 446, 520
RsaNI GTAC 4 cut(s) 365, 425, 445, 519
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 4 cut(s) 56, 237, 330, 702
Sau3AI GATC 3 cut(s) 24, 97, 109
Sau96I GGNCC 3 cut(s) 134, 188, 271
SchI GAGTC 1 cut(s) 465
ScrFI CCNGG 3 cut(s) 9, 226, 528
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 650
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 2 cut(s) 92, 655
SsiI CCGC 2 cut(s) 197, 623
SspI AATATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 7, 224, 526
StyI CCWWGG 1 cut(s) 274
TaiI ACGT 3 cut(s) 355, 375, 440
TaqI TCGA 1 cut(s) 100
TasI AATT 2 cut(s) 92, 655
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 4 cut(s) 43, 61, 385, 590
Tru1I TTAA 4 cut(s) 56, 237, 330, 702
Tru9I TTAA 4 cut(s) 56, 237, 330, 702
TscAI CASTG 1 cut(s) 255
TspGWI ACGGA 2 cut(s) 126, 528
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 134
XmaJI CCTAGG 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.