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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000006880 RLG00000011720 RLG00000033056 |
| rosa_multiflora | Rmu_co8363351.1_g000001 Rmu_sc0001493.1_g000002 Rmu_sc0001493.1_g000003 Rmu_sc0002219.1_g000021 Rmu_sc0005344.1_g000005 Rmu_sc0007230.1_g000001 Rmu_sc0014815.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00151970 |
| rosa_rugosa | Rorug01G0483500 |
| rosa_samantha | Rh2CG394900 Rh3DG198200 Rh3DG224800 Rh7BG078200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 168 |
| Acc36I | ACCTGC | 1 cut(s) | 69 |
| AccI | GTMKAC | 1 cut(s) | 597 |
| AciI | CCGC | 5 cut(s) | 15, 18, 21, 28, 500 |
| AcoI | YGGCCR | 1 cut(s) | 111 |
| AcsI | RAATTY | 1 cut(s) | 246 |
| AcuI | CTGAAG | 1 cut(s) | 635 |
| AfaI | GTAC | 1 cut(s) | 826 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 575, 782 |
| AjiI | CACGTC | 1 cut(s) | 748 |
| AjnI | CCWGG | 2 cut(s) | 384, 478 |
| AluBI | AGCT | 3 cut(s) | 398, 782, 788 |
| AluI | AGCT | 3 cut(s) | 398, 782, 788 |
| Alw21I | GWGCWC | 2 cut(s) | 278, 681 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 725 |
| AoxI | GGCC | 3 cut(s) | 111, 447, 750 |
| ApeKI | GCWGC | 2 cut(s) | 565, 719 |
| ApoI | RAATTY | 1 cut(s) | 246 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 159 |
| AspLEI | GCGC | 3 cut(s) | 169, 283, 643 |
| AspS9I | GGNCC | 1 cut(s) | 773 |
| AsuHPI | GGTGA | 3 cut(s) | 76, 283, 308 |
| AvaII | GGWCC | 1 cut(s) | 773 |
| Bbv12I | GWGCWC | 2 cut(s) | 278, 681 |
| BbvI | GCAGC | 2 cut(s) | 577, 731 |
| BccI | CCATC | 5 cut(s) | 293, 310, 499, 535, 757 |
| BceAI | ACGGC | 3 cut(s) | 102, 126, 294 |
| BciT130I | CCWGG | 2 cut(s) | 386, 480 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| BfaI | CTAG | 3 cut(s) | 72, 225, 605 |
| BfoI | RGCGCY | 1 cut(s) | 284 |
| BfuAI | ACCTGC | 1 cut(s) | 69 |
| BglII | AGATCT | 1 cut(s) | 9 |
| BisI | GCNGC | 5 cut(s) | 18, 21, 501, 566, 720 |
| BlsI | GCNGC | 5 cut(s) | 19, 22, 502, 567, 721 |
| BmcAI | AGTACT | 1 cut(s) | 826 |
| Bme1390I | CCNGG | 2 cut(s) | 386, 480 |
| Bme18I | GGWCC | 1 cut(s) | 773 |
| BmgBI | CACGTC | 1 cut(s) | 748 |
| BmgT120I | GGNCC | 1 cut(s) | 773 |
| BmiI | GGNNCC | 1 cut(s) | 775 |
| BmrFI | CCNGG | 2 cut(s) | 386, 480 |
| BmrI | ACTGGG | 1 cut(s) | 735 |
| BmsI | GCATC | 3 cut(s) | 359, 477, 818 |
| BmuI | ACTGGG | 1 cut(s) | 735 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 1 cut(s) | 804 |
| BpuEI | CTTGAG | 2 cut(s) | 364, 543 |
| BsaJI | CCNNGG | 2 cut(s) | 478, 479 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 575, 782 |
| Bse1I | ACTGG | 3 cut(s) | 273, 342, 730 |
| Bse3DI | GCAATG | 1 cut(s) | 538 |
| BseBI | CCWGG | 2 cut(s) | 386, 480 |
| BseDI | CCNNGG | 2 cut(s) | 478, 479 |
| BseGI | GGATG | 3 cut(s) | 235, 445, 809 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 575, 782 |
| BseMI | GCAATG | 1 cut(s) | 538 |
| BseMII | CTCAG | 2 cut(s) | 521, 768 |
| BseNI | ACTGG | 3 cut(s) | 273, 342, 730 |
| BseRI | GAGGAG | 1 cut(s) | 805 |
| BseXI | GCAGC | 2 cut(s) | 577, 731 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| BshFI | GGCC | 3 cut(s) | 113, 449, 752 |
| BsiHKAI | GWGCWC | 2 cut(s) | 278, 681 |
| BslFI | GGGAC | 4 cut(s) | 279, 461, 592, 759 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 575, 782 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 4 cut(s) | 279, 461, 592, 759 |
| BsnI | GGCC | 3 cut(s) | 113, 449, 752 |
| Bsp1286I | GDGCHC | 2 cut(s) | 278, 681 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| BspACI | CCGC | 5 cut(s) | 15, 18, 21, 28, 500 |
| BspANI | GGCC | 3 cut(s) | 113, 449, 752 |
| BspCNI | CTCAG | 2 cut(s) | 520, 767 |
| BspLI | GGNNCC | 1 cut(s) | 775 |
| BspMI | ACCTGC | 1 cut(s) | 69 |
| BsrDI | GCAATG | 1 cut(s) | 538 |
| BsrI | ACTGG | 3 cut(s) | 273, 342, 730 |
| BssECI | CCNNGG | 2 cut(s) | 478, 479 |
| BssMI | GATC | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 2 cut(s) | 386, 480 |
| Bst4CI | ACNGT | 3 cut(s) | 88, 181, 236 |
| Bst6I | CTCTTC | 1 cut(s) | 150 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 676 |
| BstC8I | GCNNGC | 1 cut(s) | 115 |
| BstDEI | CTNAG | 3 cut(s) | 507, 582, 754 |
| BstF5I | GGATG | 3 cut(s) | 235, 445, 809 |
| BstH2I | RGCGCY | 1 cut(s) | 284 |
| BstHHI | GCGC | 3 cut(s) | 169, 283, 643 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 615, 676 |
| BstNI | CCWGG | 2 cut(s) | 386, 480 |
| BstSCI | CCNGG | 2 cut(s) | 384, 478 |
| BstV1I | GCAGC | 2 cut(s) | 577, 731 |
| BstX2I | RGATCY | 1 cut(s) | 9 |
| BstYI | RGATCY | 1 cut(s) | 9 |
| BsuRI | GGCC | 3 cut(s) | 113, 449, 752 |
| BtrI | CACGTC | 1 cut(s) | 748 |
| BtsCI | GGATG | 3 cut(s) | 235, 445, 809 |
| BtsI | GCAGTG | 1 cut(s) | 353 |
| BtsIMutI | CAGTG | 3 cut(s) | 241, 335, 353 |
| BveI | ACCTGC | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 1 cut(s) | 115 |
| CaiI | CAGNNNCTG | 1 cut(s) | 725 |
| CfoI | GCGC | 3 cut(s) | 169, 283, 643 |
| Cfr13I | GGNCC | 1 cut(s) | 773 |
| Csp6I | GTAC | 1 cut(s) | 825 |
| CviAII | CATG | 5 cut(s) | 347, 524, 692, 735, 805 |
| CviQI | GTAC | 1 cut(s) | 825 |
| DdeI | CTNAG | 3 cut(s) | 507, 582, 754 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| EaeI | YGGCCR | 1 cut(s) | 111 |
| Eam1104I | CTCTTC | 1 cut(s) | 150 |
| EarI | CTCTTC | 1 cut(s) | 150 |
| EciI | GGCGGA | 1 cut(s) | 4 |
| Eco47I | GGWCC | 1 cut(s) | 773 |
| Eco57I | CTGAAG | 1 cut(s) | 635 |
| EcoO109I | RGGNCCY | 1 cut(s) | 773 |
| EcoRII | CCWGG | 2 cut(s) | 384, 478 |
| EcoT22I | ATGCAT | 1 cut(s) | 352 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FaeI | CATG | 5 cut(s) | 350, 527, 695, 738, 808 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 147, 179 |
| FaqI | GGGAC | 4 cut(s) | 279, 461, 592, 759 |
| FatI | CATG | 5 cut(s) | 346, 523, 691, 734, 804 |
| FauI | CCCGC | 1 cut(s) | 35 |
| FblI | GTMKAC | 1 cut(s) | 597 |
| Fnu4HI | GCNGC | 5 cut(s) | 18, 21, 501, 566, 720 |
| FokI | GGATG | 3 cut(s) | 242, 452, 796 |
| Fsp4HI | GCNGC | 5 cut(s) | 18, 21, 501, 566, 720 |
| FspBI | CTAG | 3 cut(s) | 72, 225, 605 |
| FspI | TGCGCA | 1 cut(s) | 168 |
| GlaI | GCGC | 3 cut(s) | 168, 282, 642 |
| GluI | GCNGC | 5 cut(s) | 18, 21, 501, 566, 720 |
| GsuI | CTGGAG | 1 cut(s) | 804 |
| HaeII | RGCGCY | 1 cut(s) | 284 |
| HaeIII | GGCC | 3 cut(s) | 113, 449, 752 |
| HhaI | GCGC | 3 cut(s) | 169, 283, 643 |
| Hin1II | CATG | 5 cut(s) | 350, 527, 695, 738, 808 |
| Hin6I | GCGC | 3 cut(s) | 167, 281, 641 |
| HinP1I | GCGC | 3 cut(s) | 167, 281, 641 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 2 cut(s) | 160, 173 |
| HphI | GGTGA | 3 cut(s) | 76, 283, 308 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 598 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 252, 757 |
| Hpy188III | TCNNGA | 1 cut(s) | 122 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 598 |
| Hpy99I | CGWCG | 1 cut(s) | 181 |
| HpyAV | CCTTC | 3 cut(s) | 369, 583, 764 |
| HpyCH4III | ACNGT | 3 cut(s) | 88, 181, 236 |
| HpyCH4IV | ACGT | 1 cut(s) | 747 |
| HpyCH4V | TGCA | 6 cut(s) | 350, 517, 550, 565, 670, 719 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 615, 676 |
| HpyF3I | CTNAG | 3 cut(s) | 507, 582, 754 |
| HpySE526I | ACGT | 1 cut(s) | 747 |
| Hsp92II | CATG | 5 cut(s) | 350, 527, 695, 738, 808 |
| HspAI | GCGC | 3 cut(s) | 167, 281, 641 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LmnI | GCTCC | 2 cut(s) | 684, 785 |
| Lsp1109I | GCAGC | 2 cut(s) | 577, 731 |
| LweI | GCATC | 3 cut(s) | 359, 477, 818 |
| MaeI | CTAG | 3 cut(s) | 72, 225, 605 |
| MaeII | ACGT | 1 cut(s) | 747 |
| MaeIII | GTNAC | 2 cut(s) | 88, 628 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MboII | GAAGA | 3 cut(s) | 19, 167, 779 |
| MflI | RGATCY | 1 cut(s) | 9 |
| MhlI | GDGCHC | 2 cut(s) | 278, 681 |
| MluCI | AATT | 2 cut(s) | 246, 433 |
| MmeI | TCCRAC | 3 cut(s) | 59, 387, 706 |
| Mph1103I | ATGCAT | 1 cut(s) | 352 |
| MroXI | GAANNNNTTC | 1 cut(s) | 159 |
| MseI | TTAA | 3 cut(s) | 203, 411, 832 |
| MslI | CAYNNNNRTG | 2 cut(s) | 522, 690 |
| MspR9I | CCNGG | 2 cut(s) | 386, 480 |
| MvaI | CCWGG | 2 cut(s) | 386, 480 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 615, 676 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 5 cut(s) | 350, 527, 695, 738, 808 |
| NlaIV | GGNNCC | 1 cut(s) | 775 |
| NsbI | TGCGCA | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 352 |
| PasI | CCCWGGG | 1 cut(s) | 479 |
| PdmI | GAANNNNTTC | 1 cut(s) | 159 |
| PfeI | GAWTC | 2 cut(s) | 160, 173 |
| PkrI | GCNGC | 5 cut(s) | 19, 22, 502, 567, 721 |
| PpuMI | RGGWCCY | 1 cut(s) | 773 |
| Psp5II | RGGWCCY | 1 cut(s) | 773 |
| Psp6I | CCWGG | 2 cut(s) | 384, 478 |
| PspGI | CCWGG | 2 cut(s) | 384, 478 |
| PspN4I | GGNNCC | 1 cut(s) | 775 |
| PspPI | GGNCC | 1 cut(s) | 773 |
| PspPPI | RGGWCCY | 1 cut(s) | 773 |
| PstNI | CAGNNNCTG | 1 cut(s) | 725 |
| PsuI | RGATCY | 1 cut(s) | 9 |
| RsaI | GTAC | 1 cut(s) | 826 |
| RsaNI | GTAC | 1 cut(s) | 825 |
| RseI | CAYNNNNRTG | 2 cut(s) | 522, 690 |
| SaqAI | TTAA | 3 cut(s) | 203, 411, 832 |
| SatI | GCNGC | 5 cut(s) | 18, 21, 501, 566, 720 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| Sau96I | GGNCC | 1 cut(s) | 773 |
| ScaI | AGTACT | 1 cut(s) | 826 |
| ScrFI | CCNGG | 2 cut(s) | 386, 480 |
| SduI | GDGCHC | 2 cut(s) | 278, 681 |
| SetI | ASST | 9 cut(s) | 83, 390, 400, 559, 657, 750, 775, 784, 790 |
| SfaNI | GCATC | 3 cut(s) | 359, 477, 818 |
| SinI | GGWCC | 1 cut(s) | 773 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 522, 690 |
| SmlI | CTYRAG | 2 cut(s) | 379, 558 |
| SmoI | CTYRAG | 2 cut(s) | 379, 558 |
| Sse9I | AATT | 2 cut(s) | 246, 433 |
| SsiI | CCGC | 5 cut(s) | 15, 18, 21, 28, 500 |
| SspMI | CTAG | 3 cut(s) | 72, 225, 605 |
| StyD4I | CCNGG | 2 cut(s) | 384, 478 |
| TaaI | ACNGT | 3 cut(s) | 88, 181, 236 |
| TaiI | ACGT | 1 cut(s) | 750 |
| TaqI | TCGA | 2 cut(s) | 123, 176 |
| TasI | AATT | 2 cut(s) | 246, 433 |
| TatI | WGTACW | 1 cut(s) | 824 |
| TauI | GCSGC | 3 cut(s) | 20, 23, 503 |
| TfiI | GAWTC | 2 cut(s) | 160, 173 |
| Tru1I | TTAA | 3 cut(s) | 203, 411, 832 |
| Tru9I | TTAA | 3 cut(s) | 203, 411, 832 |
| TscAI | CASTG | 3 cut(s) | 241, 342, 360 |
| TseI | GCWGC | 2 cut(s) | 565, 719 |
| TspDTI | ATGAA | 2 cut(s) | 155, 678 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| TspRI | CASTG | 3 cut(s) | 241, 342, 360 |
| VpaK11BI | GGWCC | 1 cut(s) | 773 |
| XapI | RAATTY | 1 cut(s) | 246 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 597 |
| XmnI | GAANNNNTTC | 1 cut(s) | 159 |
| XspI | CTAG | 3 cut(s) | 72, 225, 605 |
| ZrmI | AGTACT | 1 cut(s) | 826 |
| Zsp2I | ATGCAT | 1 cut(s) | 352 |