Rh3DG198200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015768
Physical Location & Seq
Forward (+)
17824059 .. 17824403
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG198200.1

Sequence Viewer

Length: 345 bp
ATGTCAGAAGGGCAAGGAAGTAGGGAGAACAACGGAGTTTCGATGCCGGGTAGTAGCACGAGACTGGTGGAGGAGGTGTTGCCCTTGATGGGTGATGGGGTGGTATCGGAATCGCTAGGAGCTGAAATGGTGGTAGTCCAACCGCCACAGGAAGTCCATGCATCACTTCCCTCCAATTTTCTTGGAGCCACAGGAGCTATTGAAAAGGCTTTTACAGGTTTTAATATGTATGAGTTTCTACAGAATTGGGCTATGCAGAGTAACAAGAGTAAGAGGCCCGGGGATGGCAGCAGGGAGGTTCCACCGTTGGTGGTGACTCACCCTCTGCGCTCGCTTGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.1

Weight (kDa)

5.05

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 89, 284
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 2 cut(s) 122, 197
AluI AGCT 2 cut(s) 122, 197
Alw26I GTCTC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 3 cut(s) 48, 279, 280
AsuHPI GGTGA 3 cut(s) 104, 311, 325
AvaI CYCGRG 1 cut(s) 278
BauI CACGAG 1 cut(s) 58
BbvI GCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 82, 89, 278
BcnI CCSGG 3 cut(s) 48, 279, 280
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
Bme1390I CCNGG 3 cut(s) 48, 279, 280
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 187, 300
BmrFI CCNGG 3 cut(s) 48, 279, 280
BmsI GCATC 2 cut(s) 33, 170
BpuMI CCSGG 3 cut(s) 48, 279, 280
BsaJI CCNNGG 2 cut(s) 278, 279
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 284
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 278, 279
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 89, 284
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 47, 279
BslI CCNNNNNNNGG 2 cut(s) 89, 284
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 277
BsoBI CYCGRG 1 cut(s) 278
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 187, 300
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 278, 279
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 332
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 46, 277, 278
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 276
Cfr9I CCCGGG 1 cut(s) 278
CviAII CATG 1 cut(s) 158
CviJI RGCY 6 cut(s) 122, 188, 197, 209, 251, 277
CviKI_1 RGCY 6 cut(s) 122, 188, 197, 209, 251, 277
Eco88I CYCGRG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 163
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 159, 227, 231, 254
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 277
HapII CCGG 2 cut(s) 47, 279
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 2 cut(s) 110, 316
HpaII CCGG 2 cut(s) 47, 279
HphI GGTGA 3 cut(s) 104, 311, 325
Hpy188I TCNGA 2 cut(s) 7, 109
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 161, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 328
LmnI GCTCC 3 cut(s) 119, 185, 194
LpnPI CCDG 7 cut(s) 50, 60, 134, 177, 201, 277, 292
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 33, 170
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 260, 313
MluCI AATT 2 cut(s) 175, 244
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 64, 67, 181, 267, 289, 333
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 47, 279
MspR9I CCNGG 3 cut(s) 48, 279, 280
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 3 cut(s) 48, 279, 280
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 187, 300
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 163
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 187, 300
PspPI GGNCC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 3 cut(s) 48, 279, 280
SetI ASST 5 cut(s) 78, 124, 199, 220, 300
SfaNI GCATC 2 cut(s) 33, 170
SfcI CTRYAG 1 cut(s) 239
SmaI CCCGGG 1 cut(s) 280
Sse9I AATT 2 cut(s) 175, 244
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 46, 277, 278
TaaI ACNGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 175, 244
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 313
TspGWI ACGGA 1 cut(s) 48
TspMI CCCGGG 1 cut(s) 278
XmaI CCCGGG 1 cut(s) 278
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.