Rh7BG078200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015768
Physical Location & Seq
Forward (+)
5588619 .. 5588918
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG078200.1

Sequence Viewer

Length: 300 bp
ATGTCAGAAGGGAAAGGAGGTAGGGAGAACAACGGCGGTACGGTGCCGGGTAGTAGCACGGGACTGGTGGAGGAGGTGTTGACCTCGATGGGTGATGTGGTGGTATCGGAATCCCTAGGAACTGAATTGGTGGTAGTCCAACCGCCACAGGCAGTCCATGCATCACTTCCCTCCAATTTTCTTGGAGCCACAGGTGCTATTGAGAAAGCTTTTGTAGGTTTTAATATGGCTGAGTTTCTGAAGAATTGGGTTGTGCAGCGTAACAAGAGTAAGAGGCCTGGGGATGGCAGTAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.33

Weight (kDa)

5.38

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 2 cut(s) 36, 143
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 284
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 115
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 82, 278
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 257
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 48, 279
BmiI GGNNCC 2 cut(s) 45, 187
BmrFI CCNGG 2 cut(s) 48, 279
BmsI GCATC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 115, 278
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 115, 278
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 1 cut(s) 277
BspACI CCGC 2 cut(s) 36, 143
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 45, 187
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 115, 278
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 158, 194
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 46, 277
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 289
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 188, 209, 230, 277
CviKI_1 RGCY 4 cut(s) 188, 209, 230, 277
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 161
FaiI YATR 2 cut(s) 159, 227
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 7, 109, 240
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 161, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 194
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 161
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 50, 60, 134, 177, 264, 291
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 260
MboII GAAGA 1 cut(s) 253
MluCI AATT 3 cut(s) 125, 175, 244
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 11, 64, 67, 94, 181, 267
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 48, 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 158, 194
NciI CCSGG 1 cut(s) 48
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 45, 187
NsiI ATGCAT 1 cut(s) 163
PceI AGGCCT 1 cut(s) 277
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 45, 187
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 48, 279
SetI ASST 6 cut(s) 22, 78, 86, 196, 211, 220
SfaNI GCATC 1 cut(s) 170
Sse9I AATT 3 cut(s) 125, 175, 244
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 2 cut(s) 36, 143
SspMI CTAG 1 cut(s) 116
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 46, 277
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 125, 175, 244
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.