Rroxscaffold_2G00151970

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015768
Physical Location & Seq
Reverse (-)
89098711 .. 89106797
8087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151970.1

Sequence Viewer

Length: 489 bp
ATGACACGCGCCCACGTTTTAGTTCTGGTTCAGCTGGCGGCAAGTTTTCAATCTCTTGGTGTTAGTTTTGGAGCTGTAAAAAGGAAGAAGTTTGAGATCGATGCTCTTGTGGAGGAAGATCTCGGTGATGATTTCGAAAAAGTGGTGTTTATGCATGAATATGACAGAGAGGGTCATAGAGAGGCCCCCGTTCGAGGGCAATGGGCGAGCTTGCGGCGGAGATGGTGGAGCACACCATCGAATGGAGGTGGGAGGGAACTGGGACATTTAATCATTGAGGTCCTCAATTGGAACTTTGGGAAGGGTCCCAACTTAGGTCCCCAATCGGCAAGTCAGCGCTTTTGGTTGGTCGCCATTTCTAGTCTTGATATGACTGCATTTCTGAAAAACTGGATGTATCCAATTATGCCAAAACAAGTTAGTGCCATTACTTCTGGGAGTGAGCTGCCATTAGTGGTGATGCCATCCCCGAGAATTACCAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

9.69

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 38, 214, 217
AfeI AGCGCT 1 cut(s) 338
AfiI CCNNNNNNNGG 4 cut(s) 194, 195, 242, 314
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 4 cut(s) 34, 74, 210, 445
AluI AGCT 4 cut(s) 34, 74, 210, 445
Alw21I GWGCWC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 338
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 445
AspLEI GCGC 2 cut(s) 11, 339
AspS9I GGNCC 4 cut(s) 184, 280, 305, 317
AsuHPI GGTGA 2 cut(s) 137, 469
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 3 cut(s) 280, 305, 317
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 432
BccI CCATC 3 cut(s) 216, 244, 472
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 1 cut(s) 408
BfaI CTAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 340
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 118
BisI GCNGC 3 cut(s) 39, 215, 446
BlsI GCNGC 3 cut(s) 40, 216, 447
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 280, 305, 317
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 4 cut(s) 184, 280, 305, 317
BmiI GGNNCC 4 cut(s) 186, 306, 307, 319
BmrFI CCNGG 1 cut(s) 481
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 91, 450
BmuI ACTGGG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 99
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 195, 242, 314
Bse1I ACTGG 2 cut(s) 264, 395
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 99
BseGI GGATG 2 cut(s) 399, 464
BseLI CCNNNNNNNGG 4 cut(s) 194, 195, 242, 314
BseMI GCAATG 1 cut(s) 206
BseNI ACTGG 2 cut(s) 264, 395
BseXI GCAGC 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 469
BslFI GGGAC 3 cut(s) 276, 291, 303
BslI CCNNNNNNNGG 4 cut(s) 194, 195, 242, 314
BsmFI GGGAC 3 cut(s) 276, 291, 303
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 96, 118
BspACI CCGC 3 cut(s) 38, 214, 217
BspANI GGCC 1 cut(s) 185
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 4 cut(s) 186, 306, 307, 319
BspT104I TTCGAA 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 206
BsrI ACTGG 2 cut(s) 264, 395
BssMI GATC 2 cut(s) 96, 118
Bst2UI CCWGG 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 36, 208, 212
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 399, 464
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 2 cut(s) 11, 339
BstKTI GATC 2 cut(s) 99, 121
BstMBI GATC 2 cut(s) 96, 118
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 479
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 99
BtsCI GGATG 2 cut(s) 399, 464
Cac8I GCNNGC 3 cut(s) 36, 208, 212
CfoI GCGC 2 cut(s) 11, 339
Cfr13I GGNCC 4 cut(s) 184, 280, 305, 317
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 34, 74, 185, 210, 445
CviKI_1 RGCY 5 cut(s) 34, 74, 185, 210, 445
DdeI CTNAG 1 cut(s) 313
DpnI GATC 2 cut(s) 98, 120
DpnII GATC 2 cut(s) 96, 118
EciI GGCGGA 1 cut(s) 232
Eco47I GGWCC 3 cut(s) 280, 305, 317
Eco47III AGCGCT 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 469
EcoO109I RGGNCCY 4 cut(s) 184, 280, 305, 317
EcoRII CCWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 156
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 152, 156, 162, 177, 371, 407
FaqI GGGAC 3 cut(s) 276, 291, 303
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 39, 215, 446
FokI GGATG 2 cut(s) 406, 451
Fsp4HI GCNGC 3 cut(s) 39, 215, 446
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 10, 338
GluI GCNGC 3 cut(s) 39, 215, 446
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 2 cut(s) 11, 339
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 2 cut(s) 9, 337
HinP1I GCGC 2 cut(s) 9, 337
HphI GGTGA 2 cut(s) 137, 469
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 154, 377
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 2 cut(s) 9, 337
KflI GGGWCCC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 96, 118
LmnI GCTCC 2 cut(s) 71, 228
LpnPI CCDG 6 cut(s) 11, 20, 245, 376, 420, 466
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 2 cut(s) 91, 450
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 98, 120
MboI GATC 2 cut(s) 96, 118
MboII GAAGA 2 cut(s) 97, 128
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 3 cut(s) 286, 402, 474
MnlI CCTC 9 cut(s) 106, 163, 175, 188, 239, 246, 271, 293, 477
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 481
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 1 cut(s) 9
NdeII GATC 2 cut(s) 96, 118
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 4 cut(s) 186, 306, 307, 319
NsiI ATGCAT 1 cut(s) 156
NspV TTCGAA 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 3 cut(s) 40, 216, 447
PpuMI RGGWCCY 3 cut(s) 280, 305, 317
Psp5II RGGWCCY 3 cut(s) 280, 305, 317
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 4 cut(s) 186, 306, 307, 319
PspPI GGNCC 4 cut(s) 184, 280, 305, 317
PspPPI RGGWCCY 3 cut(s) 280, 305, 317
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 3 cut(s) 39, 215, 446
Sau3AI GATC 2 cut(s) 96, 118
Sau96I GGNCC 4 cut(s) 184, 280, 305, 317
ScrFI CCNGG 1 cut(s) 481
SduI GDGCHC 1 cut(s) 233
SetI ASST 9 cut(s) 18, 36, 76, 212, 250, 282, 319, 447, 488
SfaNI GCATC 2 cut(s) 91, 450
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 3 cut(s) 280, 305, 317
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 3 cut(s) 286, 402, 474
SsiI CCGC 3 cut(s) 38, 214, 217
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 479
TaiI ACGT 1 cut(s) 18
TaqI TCGA 4 cut(s) 99, 135, 193, 239
TasI AATT 3 cut(s) 286, 402, 474
TauI GCSGC 2 cut(s) 41, 217
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 3 cut(s) 280, 305, 317
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.