Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0015768

Physical Location & Seq

Genomic Coordinates Reverse (-)

3882 .. 4606

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgccgggtagtagcacaggactggtggaggaggtgttgcccttgatgggtgatgtggtggtatcagaatcactaggaactgaaatggtggtagtccaaccgccgcaggaagtccatgcatcacttccctccaattttcttggagccacaggtgctattgaagaggcttttgcaggttttaatatggctgagtttatgaagaattgggctatgcagagtaacaagagtaagaggcccggggatggtagtagggaggtaccaccgttggtggtggctcaatctccgcgctcgcgtggtggtaatgaagtgatggtgctgcaagactctcaggtgcagcctttacttgggactaaaaggaaggcgttggtgctccaacataaaaatggtaagctcgtggtttctccactgaagaagaaagtggggtgccctaaggggagcaagaataaacccaagtgtgcgacaattcgtgatcaggagatgcaaggcaagaagcagagaaaatggaaagcacgtgaggaaggggagggtgctttcttaccatctgtagctgctgaagttctgaaccagaaggatgaggctgcggagcggatggatgcaagttcaaacgatgggagtgctagggcatcctcctctactagcactatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.0

Weight (kDa)

9.23

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015768)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006880 RLG00000011720 RLG00000033056
rosa_multiflora	Rmu_co8363351.1_g000001 Rmu_sc0001493.1_g000002 Rmu_sc0001493.1_g000003 Rmu_sc0002219.1_g000021 Rmu_sc0005344.1_g000005 Rmu_sc0007230.1_g000001 Rmu_sc0014815.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151970
rosa_rugosa	Rorug01G0483500
rosa_samantha	Rh2CG394900 Rh3DG198200 Rh3DG224800 Rh7BG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	2 cut(s)	256, 423
AccBSI	CCGCTC	1 cut(s)	586
AccII	CGCG	2 cut(s)	286, 292
AciI	CCGC	5 cut(s)	101, 104, 284, 581, 586
AcuI	CTGAAG	2 cut(s)	428, 573
AcvI	CACGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	47, 242, 344
AgsI	TTSAA	2 cut(s)	161, 603
AluBI	AGCT	2 cut(s)	391, 548
AluI	AGCT	2 cut(s)	391, 548
Alw21I	GWGCWC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	316, 334, 548, 578
Asp718I	GGTACC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	3 cut(s)	6, 237, 238
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanI	GGYRCC	2 cut(s)	256, 423
BauI	CACGAG	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	303, 346, 535, 565
BccI	CCATC	6 cut(s)	40, 236, 304, 547, 583, 602
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	3 cut(s)	6, 237, 238
BfaI	CTAG	3 cut(s)	74, 618, 636
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	5 cut(s)	104, 317, 335, 549, 579
BlsI	GCNGC	5 cut(s)	105, 318, 336, 550, 580
Bme1390I	CCNGG	3 cut(s)	6, 237, 238
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	3 cut(s)	145, 258, 425
BmrFI	CCNGG	3 cut(s)	6, 237, 238
BmsI	GCATC	4 cut(s)	128, 468, 583, 632
BpuMI	CCSGG	3 cut(s)	6, 237, 238
BsaAI	YACGTR	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	236, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 242, 344
Bse1I	ACTGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	236, 237
BseGI	GGATG	5 cut(s)	247, 577, 594, 598, 623
BseLI	CCNNNNNNNGG	3 cut(s)	47, 242, 344
BseMII	CTCAG	2 cut(s)	180, 341
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	2 cut(s)	44, 619
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	303, 346, 535, 565
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	286, 292
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	2 cut(s)	256, 423
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	5, 237
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	47, 242, 344
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	372, 428
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	5 cut(s)	101, 104, 284, 581, 586
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	181, 340
BspFNI	CGCG	2 cut(s)	286, 292
BspLI	GGNNCC	3 cut(s)	145, 258, 425
BspMI	ACCTGC	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	256, 423
BsrBI	CCGCTC	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	236, 237
BssMI	GATC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	189, 327, 429
BstF5I	GGATG	5 cut(s)	247, 577, 594, 598, 623
BstFNI	CGCG	2 cut(s)	286, 292
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	3 cut(s)	4, 235, 236
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	2 cut(s)	286, 292
BstV1I	GCAGC	4 cut(s)	303, 346, 535, 565
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	5 cut(s)	247, 577, 594, 598, 623
BtsIMutI	CAGTG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	234
Cfr9I	CCCGGG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	189, 327, 429
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco57I	CTGAAG	2 cut(s)	428, 573
Eco72I	CACGTG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	121
FaeI	CATG	1 cut(s)	119
FaiI	YATR	5 cut(s)	117, 185, 197, 212, 378
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	104, 317, 335, 549, 579
FokI	GGATG	5 cut(s)	254, 584, 601, 605, 610
Fsp4HI	GCNGC	5 cut(s)	104, 317, 335, 549, 579
FspBI	CTAG	3 cut(s)	74, 618, 636
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	5 cut(s)	104, 317, 335, 549, 579
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	5, 237
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	68, 323
HpaII	CCGG	2 cut(s)	5, 237
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	67, 561
Hpy188III	TCNNGA	2 cut(s)	467, 473
HpyAV	CCTTC	3 cut(s)	352, 512, 562
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	7 cut(s)	119, 173, 214, 319, 334, 481, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	189, 327, 429
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	4 cut(s)	143, 375, 435, 583
Lsp1109I	GCAGC	4 cut(s)	303, 346, 535, 565
LweI	GCATC	4 cut(s)	128, 468, 583, 632
MaeI	CTAG	3 cut(s)	74, 618, 636
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	586
MboI	GATC	1 cut(s)	469
MboII	GAAGA	4 cut(s)	173, 211, 421, 424
MhlI	GDGCHC	2 cut(s)	372, 428
MluCI	AATT	3 cut(s)	133, 202, 462
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	121, 397
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	2 cut(s)	5, 237
MspR9I	CCNGG	3 cut(s)	6, 237, 238
MvnI	CGCG	2 cut(s)	286, 292
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	3 cut(s)	6, 237, 238
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	3 cut(s)	145, 258, 425
NsiI	ATGCAT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	5 cut(s)	105, 318, 336, 550, 580
PleI	GAGTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	512
PmlI	CACGTG	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	145, 258, 425
PspPI	GGNCC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	104, 317, 335, 549, 579
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	6, 237, 238
SduI	GDGCHC	2 cut(s)	372, 428
SetI	ASST	8 cut(s)	36, 154, 178, 258, 333, 393, 514, 550
SfaNI	GCATC	4 cut(s)	128, 468, 583, 632
SfcI	CTRYAG	1 cut(s)	543
SmaI	CCCGGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	3 cut(s)	133, 202, 462
SsiI	CCGC	5 cut(s)	101, 104, 284, 581, 586
SspMI	CTAG	3 cut(s)	74, 618, 636
StyD4I	CCNGG	3 cut(s)	4, 235, 236
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	514
TasI	AATT	3 cut(s)	133, 202, 462
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	4 cut(s)	316, 334, 548, 578
TspDTI	ATGAA	2 cut(s)	212, 318
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	3 cut(s)	74, 618, 636
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.