RLG00000008653

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003234
Physical Location & Seq
Forward (+)
34232184 .. 34236650
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008653

Sequence Viewer

Length: 3123 bp
ATGAGCAGAAGGCACTTCAACTCTCTACTCTTCAACTCCATCTCTTCTTCTCCCCTTTTCTCCAGAAACCCATCCCAATCCTTCGTTTCTTCACTCAAATCATACCCCCAATGTCTCTTCTCCAGATTCCTCTGCACCTCTCCGCCGGACAATCTCGACGGCCTCCTCGATCCCCAGGACTTCCCTACGCCGGAGACCCACTCTCTTTCCGCACAAGACTTCGCCTTTCTGCGCGACTCGCCGAAACTTGACCCCGATAAGTGTTCTAACGACGCCGTTTTGATTTCTAATGCCATTAGGAATAGTTCTGATTCATTTGGGGAAGAAACCCACAAGTTTCTTAGGAGGTTTAGGGATAATTTGAATGAAACTTTGGTGGTGCTGGTTCTGAGTCTTGTAAAGAGTCCCGAGTTGGGTGTCAAGTTTTTCATTTGGGCAGGTAGACAAATTGGGTATAGTCATACTGCTTCTGTATATAATGCATTGTTGGAGTTACTGGAGTGTGGTAGTAGCAACAGAGTACCGGAGCATTTTTTGCGAGAAATTAAGGGTGATGATAGAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTCGCAAGTGTTGCCGAAATGGGTTGTGGAATGTAGCTTTGGAAGAGCTTGGGAGGCTTAAGGATTTCGGGTACAGGCCGAGTCAAGCAACTTACAATGCTTTGGTTCAGGTGTTTTTGAGAGCTGATAGGCTGGACACAGCACACTTGGTTCATGGGGAGATGTTAGAGTTGGGGTTTAAGATGGATGAGTATACGCTAGGTTGTTTCGGTCATGCCCTGTGTAAAGCTGGGAGGTGGAAGGAGGGACTTGCATTGATTGAGAAGGAAGAGTTTGTGCCCAATACTGTTCTTTATACCAAGATGATATCTGGGTTGTGTGAGGCTTCACTTTTTGAGGAAGCTATGGAGTTGTTGAACAGAATGCGCTGTAATTCTTGCATTCCTAACGTTGTAACCTATAGGACTTTGCTTTGTGGATGTTTGAAGAAAAAACAGCTTGGCAGGTGCAAGAGAATTCTTAGTATGATGATCACGGAAGGTTGTTATCCTAGCCCTGGGATATTTAATTCTCTTGTTCATGCTTATTGCAGATCAGGAGATTACTCTTATGCTTATAAGTTGCTAAAGAAAATGGTCAGATGTGGGTGCCGGCCAGGCTATGTGGTTTACAATATCTTGATTGGTGGTATCTGTGGACACGAAGAATTACCTACCTTAGATATACTAGACATGGCTGAAAAAGCTTATGGTGAGATGCTTAATGCAGGGGTTGTTTTAAATAAGGTAAATGTAAGCAATTTTGTGCGATGTCTTTGTGGCCATGGAAAATTTGACAAAGCCTACAAGGTCATCAATGAAATGATGAGCAAGGGTTTTGTTCCTGACACTAGTACATACTCTAAAGTTATTGGCTTTTTGTGCAATGCCTCCAAGGTAGAACAAGCATTATTGTTGTTTGAAGAAATGAAGCAAAACGGTGTTGTTCCTGATGTCTACACCTATACCATCTTAATTGATAGTTTTTCTAAGGCTGGTCTTACTGAACAGGCTCGGAACTGGTTTAATGAAATGGTAGGAAATGGTTGTGCACCAAACGTGGTAACTTATACTGCTCTTATACATGCATACCTTAAAGCAAGGAAGGTGCCTGATGCAAATCAACTCTTTGAGATGATGTTGACTCAAGGTTGCATTCCTAATGCTATTACTTATAGTGCTTTGATCGATGGCCATTGTAAAGCTAGAGAGACTGAAAAGGCTTGCCTGATTTATGCAAGAATGAGAGGTAATGTGGGAGTCCCTGATGTTGATATGTATTTCAAAAGTGATGATCAGAGTTTGAAAGAACCTAATGTGCATACTTATGGAGCGTTGGTGGATGGTTTATGTAAAGCCAACAAGGTCAGTGAGGCCGGTGACTTATTGGATGCTATGTTGGTAGAAGGTTGTGAACCTAACCACATTGTTTATGATGCTCTTATAGATGGATTTTGCAAGTCTGGGAAGCTCGATGAAGCACAAAAGGTGTTTGCTAAAATGTCAGAGCATGGGTATAGTCCAAATGTGTATACGTACAGCTCTTTGATTGACAGGTTGTTCAAGGATAAAAGACTGGATCTTGTTTTAAAAGTCCTGTCTAAAATGTTAGAAAACTCTTGTTCACCAAATGTTGTTATCTATACAGAGATGGTCGATGGCCTTTGTAAGGTTGGAAAGACAGATGAAGCTTATAAGCTTATGCTAATGATGGAAGAAAAAGGATGTAATCCAAACGTTGTGACTTACACTGCGATGATAGATGGCCTTGGGAAAGCAGGCAAAATCGACAAATGTCTTGAGCTCTTTAAAGCAATGAGCTCCAAGGGTTGTGCTCCCAATTTTATCACCTACAAGGTTTTGATAAACCATTGCTGTGCAATTGGTCTTTTGGATGAAGCTCATAAACTTTTGGATGAAATGAAACAAACATATTGGCCAAAGCATTTGGCAGGCTACCGTAAAGTTATTGAAGGTTACAACCGAGAATTCATAGCCTCACTTGGGCTTTTAAATGAGATAAGTGAGTGCGACTCGTTGCCAATCGTTCACATATACAGAGTTTTGGTTGATAATTTTGTAAAGGCTGGAAGACTGGAAGTGGCTCTGGAGCTGCATGAAGAGATTTCTTCTTCTACCCCTTTTACATCTGTGAACAAGGATATGTATACTTTACTGATCGAGAACCTATCACATGCAAATAAGGCTGATAAGGCACTGCAGATGTTTGCAGAAATGATAAGGCTGGGTGGTTATCCAGAGTTGAGTACATTTTTCCACCTCATCAAAGGGCTTATTAAAATCAATAGGTGGGATGAAGCTCTTCAACTATCGGATAGCATATGCCAGATGTCTGATGACTCACTGCACAATCTGATGACTCACTGGACAAAGCATGGGCCTAAGGCTTATGGGCAGATGGTGCTGAATGGGCATATGAAGGTCACTGCTGCTAGAATTTGTTTACTGCTCCATTACTGTTTTCACCTTGATCATCTCAAGGTGAAAGAACATTTGGGTAGAAGAATGGATGCAATCATGAGCATGGATTGA

Protein Analysis

1041

Amino Acids

116.94

Weight (kDa)

6.99

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 224 - 273 4.1e-06 PPR repeat family
PPR_1 PF12854 289 - 320 3.6e-07 PPR repeat
PPR_2 PF13041 291 - 340 4.6e-14 PPR repeat family
PPR_1 PF12854 358 - 390 1.8e-06 PPR repeat
PPR_3 PF13812 362 - 408 2.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 365 - 409 4.2e-10 PPR repeat family
PPR PF01535 365 - 394 4e-07 PPR repeat
PPR_long PF17177 375 - 525 1.5e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 445 - 486 8.3e-09 PPR repeat family
PPR_3 PF13812 460 - 519 4.5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 472 - 521 7.4e-16 PPR repeat family
PPR_long PF17177 490 - 607 1.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 503 - 536 1.8e-08 PPR repeat
PPR PF01535 510 - 540 4.1e-07 PPR repeat
PPR_2 PF13041 514 - 553 5.4e-10 PPR repeat family
PPR_3 PF13812 532 - 587 1.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 538 - 570 4.8e-07 PPR repeat
PPR_2 PF13041 542 - 591 5.3e-17 PPR repeat family
PPR PF01535 545 - 575 8.6e-06 PPR repeat
PPR_1 PF12854 574 - 605 3.2e-07 PPR repeat
PPR_1 PF12854 627 - 656 5.8e-08 PPR repeat
PPR_2 PF13041 628 - 668 3.8e-08 PPR repeat family
PPR_3 PF13812 652 - 708 3.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 660 - 692 1.3e-12 PPR repeat
PPR_2 PF13041 665 - 712 6.7e-15 PPR repeat family
PPR PF01535 667 - 695 4.9e-07 PPR repeat
PPR_3 PF13812 686 - 739 1.1e-08 Pentatricopeptide repeat domain
PPR_long PF17177 714 - 836 3e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 722 - 781 3.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 730 - 761 1.4e-08 PPR repeat
PPR_2 PF13041 733 - 782 1.2e-16 PPR repeat family
PPR_3 PF13812 760 - 815 1.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 764 - 796 1.6e-10 PPR repeat
PPR_2 PF13041 768 - 816 6.3e-17 PPR repeat family
PPR PF01535 771 - 801 3.3e-09 PPR repeat
PPR_1 PF12854 799 - 832 1.2e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1149, 2265
AarI CACCTGC 1 cut(s) 1026
Acc36I ACCTGC 2 cut(s) 428, 1026
AccB1I GGYRCC 2 cut(s) 1179, 1678
AccI GTMKAC 5 cut(s) 442, 785, 1527, 2102, 2738
AccII CGCG 1 cut(s) 234
AciI CCGC 2 cut(s) 143, 210
AclI AACGTT 2 cut(s) 981, 2307
AclWI GGATC 2 cut(s) 164, 2157
AcoI YGGCCR 4 cut(s) 1184, 1351, 1762, 2507
AcsI RAATTY 4 cut(s) 1047, 1361, 2558, 3027
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 5 cut(s) 522, 665, 1426, 2108, 2839
AfiI CCNNNNNNNGG 5 cut(s) 190, 413, 1088, 2239, 2574
AflII CTTAAG 1 cut(s) 650
AhlI ACTAGT 1 cut(s) 1421
AjnI CCWGG 3 cut(s) 174, 1087, 1186
AjuI GAANNNNNNNTTGG 6 cut(s) 356, 388, 614, 646, 3068, 3100
Alw21I GWGCWC 4 cut(s) 1624, 2376, 2393, 2407
Alw26I GTCTC 3 cut(s) 119, 188, 1775
Alw44I GTGCAC 1 cut(s) 1620
AlwI GGATC 2 cut(s) 164, 2157
Ama87I CYCGRG 1 cut(s) 407
ApaLI GTGCAC 1 cut(s) 1620
ApeKI GCWGC 2 cut(s) 2683, 3020
ApoI RAATTY 4 cut(s) 1047, 1361, 2558, 3027
Asp700I GAANNNNTTC 1 cut(s) 2892
AspLEI GCGC 2 cut(s) 234, 960
AspS9I GGNCC 1 cut(s) 2969
AsuHPI GGTGA 7 cut(s) 563, 1295, 1961, 2187, 2410, 3047, 3085
AvaI CYCGRG 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 2973
BaeGI GKGCMC 2 cut(s) 873, 1624
BalI TGGCCA 3 cut(s) 1353, 1764, 2509
BanI GGYRCC 2 cut(s) 1179, 1678
BanII GRGCYC 2 cut(s) 2376, 2393
BbsI GAAGAC 1 cut(s) 2668
Bbv12I GWGCWC 4 cut(s) 1624, 2376, 2393, 2407
BbvI GCAGC 2 cut(s) 2670, 3007
BceAI ACGGC 2 cut(s) 175, 260
BciT130I CCWGG 3 cut(s) 176, 1089, 1188
BclI TGATCA 3 cut(s) 1062, 1864, 3061
BcoDI GTCTC 3 cut(s) 119, 188, 1775
BcuI ACTAGT 1 cut(s) 1421
BfaI CTAG 6 cut(s) 791, 1083, 1259, 1422, 1776, 3024
BfmI CTRYAG 2 cut(s) 991, 2789
BfrI CTTAAG 1 cut(s) 650
BfuAI ACCTGC 2 cut(s) 428, 1026
BglI GCCNNNNNGGC 1 cut(s) 1188
BisI GCNGC 2 cut(s) 2684, 3021
BlsI GCNGC 2 cut(s) 2685, 3022
Bme1390I CCNGG 3 cut(s) 176, 1089, 1188
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 2969
BmiI GGNNCC 2 cut(s) 1181, 1680
BmrFI CCNGG 3 cut(s) 176, 1089, 1188
BmsI GCATC 5 cut(s) 1278, 1675, 1951, 1996, 3091
BoxI GACNNNNGTC 1 cut(s) 2364
BpiI GAAGAC 1 cut(s) 2668
BplI GAGNNNNNCTC 4 cut(s) 185, 217, 2588, 2620
BpmI CTGGAG 4 cut(s) 46, 106, 518, 2699
BpuEI CTTGAG 3 cut(s) 1701, 2390, 3053
Bsa29I ATCGAT 1 cut(s) 1758
BsaAI YACGTR 1 cut(s) 2106
BsaBI GATNNNNATC 1 cut(s) 1689
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 7 cut(s) 174, 1087, 1088, 1354, 1464, 2338, 2394
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 1893, 1923
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 413, 1088, 2239, 2574
Bse118I RCCGGY 2 cut(s) 1182, 1946
Bse1I ACTGG 5 cut(s) 501, 1595, 2151, 2670, 2960
Bse21I CCTNAGG 1 cut(s) 2973
Bse3DI GCAATG 3 cut(s) 1462, 2391, 2440
Bse8I GATNNNNATC 1 cut(s) 1689
BseBI CCWGG 3 cut(s) 176, 1089, 1188
BseCI ATCGAT 1 cut(s) 1758
BseDI CCNNGG 7 cut(s) 174, 1087, 1088, 1354, 1464, 2338, 2394
BseJI GATNNNNATC 1 cut(s) 1689
BseLI CCNNNNNNNGG 5 cut(s) 190, 413, 1088, 2239, 2574
BseMI GCAATG 3 cut(s) 1462, 2391, 2440
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 5 cut(s) 501, 1595, 2151, 2670, 2960
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 2 cut(s) 873, 1624
BseXI GCAGC 2 cut(s) 2670, 3007
BseYI CCCAGC 2 cut(s) 821, 2815
BsgI GTGCAG 2 cut(s) 118, 2921
Bsh1236I CGCG 1 cut(s) 234
BshNI GGYRCC 2 cut(s) 1179, 1678
BshVI ATCGAT 1 cut(s) 1758
BsiHKAI GWGCWC 4 cut(s) 1624, 2376, 2393, 2407
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 5 cut(s) 146, 191, 524, 1183, 1947
BslFI GGGAC 3 cut(s) 390, 852, 1817
BslI CCNNNNNNNGG 5 cut(s) 190, 413, 1088, 2239, 2574
BsmAI GTCTC 3 cut(s) 119, 188, 1775
BsmFI GGGAC 3 cut(s) 390, 852, 1817
BsmI GAATGC 3 cut(s) 960, 972, 1725
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 5 cut(s) 873, 1624, 2376, 2393, 2407
Bsp143I GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
Bsp19I CCATGG 1 cut(s) 1354
BspACI CCGC 2 cut(s) 143, 210
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 1758
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 3108
BspLI GGNNCC 2 cut(s) 1181, 1680
BspMAI CTGCAG 1 cut(s) 2793
BspMI ACCTGC 2 cut(s) 428, 1026
BspPI GGATC 2 cut(s) 164, 2157
BspQI GCTCTTC 2 cut(s) 630, 2898
BspT107I GGYRCC 2 cut(s) 1179, 1678
BspTI CTTAAG 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 3 cut(s) 1462, 2391, 2440
BsrFI RCCGGY 2 cut(s) 1182, 1946
BsrI ACTGG 5 cut(s) 501, 1595, 2151, 2670, 2960
BssAI RCCGGY 2 cut(s) 1182, 1946
BssECI CCNNGG 7 cut(s) 174, 1087, 1088, 1354, 1464, 2338, 2394
BssMI GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
BssNAI GTATAC 3 cut(s) 786, 2103, 2739
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 4 cut(s) 1354, 1464, 2338, 2394
Bst1107I GTATAC 3 cut(s) 786, 2103, 2739
Bst2UI CCWGG 3 cut(s) 176, 1089, 1188
Bst4CI ACNGT 4 cut(s) 880, 1511, 2531, 3050
Bst6I CTCTTC 7 cut(s) 35, 49, 122, 630, 855, 2685, 2898
BstACI GRCGYC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 650
BstAPI GCANNNNNTGC 3 cut(s) 535, 603, 2992
BstBAI YACGTR 1 cut(s) 2106
BstC8I GCNNGC 4 cut(s) 1184, 1795, 2350, 2524
BstDEI CTNAG 6 cut(s) 341, 389, 1052, 1249, 1560, 2973
BstDSI CCRYGG 1 cut(s) 1354
BstENI CCTNNNNNAGG 1 cut(s) 2237
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 2 cut(s) 234, 960
BstKTI GATC 8 cut(s) 172, 1065, 1127, 1758, 1867, 2152, 2751, 3064
BstMAI GTCTC 3 cut(s) 119, 188, 1775
BstMBI GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
BstNI CCWGG 3 cut(s) 176, 1089, 1188
BstNSI RCATGY 2 cut(s) 1658, 2768
BstPAI GACNNNNGTC 1 cut(s) 2364
BstSCI CCNGG 3 cut(s) 174, 1087, 1186
BstSFI CTRYAG 2 cut(s) 991, 2789
BstSLI GKGCMC 2 cut(s) 873, 1624
BstSNI TACGTA 1 cut(s) 2106
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 2670, 3007
BstV2I GAAGAC 1 cut(s) 2668
BstX2I RGATCY 1 cut(s) 2149
BstYI RGATCY 1 cut(s) 2149
BstZ17I GTATAC 3 cut(s) 786, 2103, 2739
Bsu15I ATCGAT 1 cut(s) 1758
Bsu36I CCTNAGG 1 cut(s) 2973
BsuTUI ATCGAT 1 cut(s) 1758
BtgI CCRYGG 1 cut(s) 1354
BtgZI GCGATG 2 cut(s) 1354, 2339
BtsI GCAGTG 4 cut(s) 2319, 2786, 2933, 3015
BtsIMutI CAGTG 6 cut(s) 1945, 2319, 2786, 2933, 2953, 3015
BveI ACCTGC 2 cut(s) 428, 1026
Cac8I GCNNGC 4 cut(s) 1184, 1795, 2350, 2524
CciI TCATGA 1 cut(s) 3108
CfoI GCGC 2 cut(s) 234, 960
Cfr10I RCCGGY 2 cut(s) 1182, 1946
Cfr13I GGNCC 1 cut(s) 2969
ClaI ATCGAT 1 cut(s) 1758
CseI GACGC 1 cut(s) 281
Csp6I GTAC 5 cut(s) 521, 664, 1425, 2107, 2838
CviQI GTAC 5 cut(s) 521, 664, 1425, 2107, 2838
DdeI CTNAG 6 cut(s) 341, 389, 1052, 1249, 1560, 2973
DpnI GATC 8 cut(s) 171, 1064, 1126, 1757, 1866, 2151, 2750, 3063
DpnII GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
DraI TTTAAA 4 cut(s) 1311, 2160, 2380, 2583
EaeI YGGCCR 4 cut(s) 1184, 1351, 1762, 2507
Eam1104I CTCTTC 7 cut(s) 35, 49, 122, 630, 855, 2685, 2898
EarI CTCTTC 7 cut(s) 35, 49, 122, 630, 855, 2685, 2898
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 2374, 2391
Eco105I TACGTA 1 cut(s) 2106
Eco130I CCWWGG 4 cut(s) 1354, 1464, 2338, 2394
Eco24I GRGCYC 2 cut(s) 2376, 2393
Eco31I GGTCTC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 900
Eco53kI GAGCTC 2 cut(s) 2374, 2391
Eco81I CCTNAGG 1 cut(s) 2973
Eco88I CYCGRG 1 cut(s) 407
EcoICRI GAGCTC 2 cut(s) 2374, 2391
EcoNI CCTNNNNNAGG 1 cut(s) 2237
EcoRI GAATTC 2 cut(s) 1047, 2558
EcoRII CCWGG 3 cut(s) 174, 1087, 1186
EcoRV GATATC 1 cut(s) 900
EcoT14I CCWWGG 4 cut(s) 1354, 1464, 2338, 2394
EcoT22I ATGCAT 2 cut(s) 484, 1660
EcoT38I GRGCYC 2 cut(s) 2376, 2393
ErhI CCWWGG 4 cut(s) 1354, 1464, 2338, 2394
FaqI GGGAC 3 cut(s) 390, 852, 1817
FauNDI CATATG 2 cut(s) 2912, 3006
FbaI TGATCA 3 cut(s) 1062, 1864, 3061
FblI GTMKAC 5 cut(s) 442, 785, 1527, 2102, 2738
Fnu4HI GCNGC 2 cut(s) 2684, 3021
FriOI GRGCYC 2 cut(s) 2376, 2393
Fsp4HI GCNGC 2 cut(s) 2684, 3021
FspBI CTAG 6 cut(s) 791, 1083, 1259, 1422, 1776, 3024
GlaI GCGC 2 cut(s) 233, 959
GluI GCNGC 2 cut(s) 2684, 3021
GsaI CCCAGC 2 cut(s) 825, 2819
GsuI CTGGAG 4 cut(s) 46, 106, 518, 2699
HapII CCGG 5 cut(s) 146, 191, 524, 1183, 1947
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 234, 960
Hin1I GRCGYC 1 cut(s) 273
Hin6I GCGC 2 cut(s) 232, 958
HinP1I GCGC 2 cut(s) 232, 958
HincII GTYRAC 1 cut(s) 1713
HindII GTYRAC 1 cut(s) 1713
HindIII AAGCTT 3 cut(s) 1275, 2259, 2267
HpaII CCGG 5 cut(s) 146, 191, 524, 1183, 1947
HphI GGTGA 7 cut(s) 563, 1295, 1961, 2187, 2410, 3047, 3085
Hpy188I TCNGA 9 cut(s) 310, 390, 1172, 1587, 1869, 2077, 2905, 2926, 2946
Hpy99I CGWCG 2 cut(s) 161, 275
HpyAV CCTTC 9 cut(s) 3, 91, 826, 850, 1064, 1669, 1970, 2537, 3004
HpyCH4III ACNGT 4 cut(s) 880, 1511, 2531, 3050
HpyCH4IV ACGT 4 cut(s) 981, 1629, 2105, 2307
HpyF3I CTNAG 6 cut(s) 341, 389, 1052, 1249, 1560, 2973
HpySE526I ACGT 4 cut(s) 981, 1629, 2105, 2307
Hsp92I GRCGYC 1 cut(s) 273
HspAI GCGC 2 cut(s) 232, 958
KroI GCCGGC 1 cut(s) 1182
KroNI GCCGGC 1 cut(s) 1184
Ksp22I TGATCA 3 cut(s) 1062, 1864, 3061
Kzo9I GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
LguI GCTCTTC 2 cut(s) 630, 2898
LmnI GCTCC 6 cut(s) 526, 1901, 2396, 2410, 2680, 3045
Lsp1109I GCAGC 2 cut(s) 2670, 3007
LweI GCATC 5 cut(s) 1278, 1675, 1951, 1996, 3091
MaeI CTAG 6 cut(s) 791, 1083, 1259, 1422, 1776, 3024
MaeII ACGT 4 cut(s) 981, 1629, 2105, 2307
MaeIII GTNAC 7 cut(s) 492, 985, 1633, 1949, 2311, 2546, 3013
MalI GATC 8 cut(s) 171, 1064, 1126, 1757, 1866, 2151, 2750, 3063
MboI GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
MfeI CAATTG 1 cut(s) 2451
MflI RGATCY 1 cut(s) 2149
MhlI GDGCHC 5 cut(s) 873, 1624, 2376, 2393, 2407
MlsI TGGCCA 3 cut(s) 1353, 1764, 2509
MluNI TGGCCA 3 cut(s) 1353, 1764, 2509
MlyI GAGTC 9 cut(s) 230, 400, 412, 682, 1708, 1839, 2597, 2924, 2944
MmeI TCCRAC 2 cut(s) 468, 2224
Mox20I TGGCCA 3 cut(s) 1353, 1764, 2509
Mph1103I ATGCAT 2 cut(s) 484, 1660
MroNI GCCGGC 1 cut(s) 1182
MroXI GAANNNNTTC 1 cut(s) 2892
MscI TGGCCA 3 cut(s) 1353, 1764, 2509
MslI CAYNNNNRTG 4 cut(s) 1896, 2324, 2445, 3113
Msp20I TGGCCA 3 cut(s) 1353, 1764, 2509
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 5 cut(s) 146, 191, 524, 1183, 1947
MspR9I CCNGG 3 cut(s) 176, 1089, 1188
MunI CAATTG 1 cut(s) 2451
Mva1269I GAATGC 3 cut(s) 960, 972, 1725
MvaI CCWGG 3 cut(s) 176, 1089, 1188
MvnI CGCG 1 cut(s) 234
NaeI GCCGGC 1 cut(s) 1184
NcoI CCATGG 1 cut(s) 1354
NdeI CATATG 2 cut(s) 2912, 3006
NdeII GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
NgoMIV GCCGGC 1 cut(s) 1182
NlaIV GGNNCC 2 cut(s) 1181, 1680
NmeAIII GCCGAG 1 cut(s) 696
NmuCI GTSAC 3 cut(s) 1949, 2311, 3013
NsiI ATGCAT 2 cut(s) 484, 1660
NspI RCATGY 2 cut(s) 1658, 2768
PagI TCATGA 1 cut(s) 3108
PaqCI CACCTGC 1 cut(s) 1026
PasI CCCWGGG 1 cut(s) 1088
PciSI GCTCTTC 2 cut(s) 630, 2898
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 3 cut(s) 960, 972, 1725
PdiI GCCGGC 1 cut(s) 1184
PdmI GAANNNNTTC 1 cut(s) 2892
PfeI GAWTC 3 cut(s) 126, 311, 592
PkrI GCNGC 2 cut(s) 2685, 3022
PleI GAGTC 9 cut(s) 230, 399, 411, 681, 1708, 1838, 2597, 2924, 2944
PpsI GAGTC 9 cut(s) 230, 399, 411, 681, 1708, 1838, 2597, 2924, 2944
Ppu21I YACGTR 1 cut(s) 2106
PshAI GACNNNNGTC 1 cut(s) 2364
PsiI TTATAA 2 cut(s) 1149, 2265
Psp124BI GAGCTC 2 cut(s) 2376, 2393
Psp1406I AACGTT 2 cut(s) 981, 2307
Psp6I CCWGG 3 cut(s) 174, 1087, 1186
PspFI CCCAGC 2 cut(s) 821, 2815
PspGI CCWGG 3 cut(s) 174, 1087, 1186
PspN4I GGNNCC 2 cut(s) 1181, 1680
PspPI GGNCC 1 cut(s) 2969
PstI CTGCAG 1 cut(s) 2793
PsuI RGATCY 1 cut(s) 2149
RsaI GTAC 5 cut(s) 522, 665, 1426, 2108, 2839
RsaNI GTAC 5 cut(s) 521, 664, 1425, 2107, 2838
RseI CAYNNNNRTG 4 cut(s) 1896, 2324, 2445, 3113
SacI GAGCTC 2 cut(s) 2376, 2393
SapI GCTCTTC 2 cut(s) 630, 2898
SatI GCNGC 2 cut(s) 2684, 3021
Sau3AI GATC 8 cut(s) 169, 1062, 1124, 1755, 1864, 2149, 2748, 3061
Sau96I GGNCC 1 cut(s) 2969
SchI GAGTC 9 cut(s) 230, 400, 412, 682, 1708, 1839, 2597, 2924, 2944
ScrFI CCNGG 3 cut(s) 176, 1089, 1188
SduI GDGCHC 5 cut(s) 873, 1624, 2376, 2393, 2407
SfaNI GCATC 5 cut(s) 1278, 1675, 1951, 1996, 3091
SfcI CTRYAG 2 cut(s) 991, 2789
SmiMI CAYNNNNRTG 4 cut(s) 1896, 2324, 2445, 3113
SmlI CTYRAG 4 cut(s) 650, 1716, 2369, 3068
SmoI CTYRAG 4 cut(s) 650, 1716, 2369, 3068
SnaBI TACGTA 1 cut(s) 2106
SpeI ACTAGT 1 cut(s) 1421
SsiI CCGC 2 cut(s) 143, 210
SspMI CTAG 6 cut(s) 791, 1083, 1259, 1422, 1776, 3024
SstI GAGCTC 2 cut(s) 2376, 2393
StyD4I CCNGG 3 cut(s) 174, 1087, 1186
StyI CCWWGG 4 cut(s) 1354, 1464, 2338, 2394
TaaI ACNGT 4 cut(s) 880, 1511, 2531, 3050
TaiI ACGT 4 cut(s) 984, 1632, 2108, 2310
TaqI TCGA 7 cut(s) 156, 168, 1758, 2043, 2226, 2358, 2751
TaqII GACCGA 1 cut(s) 791
TatI WGTACW 2 cut(s) 1424, 2837
TfiI GAWTC 3 cut(s) 126, 311, 592
TscAI CASTG 6 cut(s) 1945, 2326, 2793, 2940, 2960, 3022
TseFI GTSAC 3 cut(s) 1949, 2311, 3013
TseI GCWGC 2 cut(s) 2683, 3020
Tsp45I GTSAC 3 cut(s) 1949, 2311, 3013
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 6 cut(s) 1945, 2326, 2793, 2940, 2960, 3022
Vha464I CTTAAG 1 cut(s) 650
VneI GTGCAC 1 cut(s) 1620
XagI CCTNNNNNAGG 1 cut(s) 2237
XapI RAATTY 4 cut(s) 1047, 1361, 2558, 3027
XceI RCATGY 2 cut(s) 1658, 2768
XmiI GTMKAC 5 cut(s) 442, 785, 1527, 2102, 2738
XmnI GAANNNNTTC 1 cut(s) 2892
XspI CTAG 6 cut(s) 791, 1083, 1259, 1422, 1776, 3024
Zsp2I ATGCAT 2 cut(s) 484, 1660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.