Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003234

Physical Location & Seq

Genomic Coordinates Reverse (-)

13145139 .. 13146447

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACTCGCATTGTCAAATTCCCATCCTTGGAAAAATTATCCATGAGTTGTACTCAACTGGAGACGTTCATCTTTGATTCTATGAGTAAAAGTAATACAATTGGCAAAGACACCAAAGACACCGACTCAAGCGAAAACCATGAGACTGAAGTAGTGCAACCTTTTCTTTTTGACAACAAGGTTGAATTTCCTAGGTTGGAGAGTTTGTCTCTCAAGGGTTTGACAAAGTTGACCACAATATGGCACAGTCAACTTTCTCTAAACTCCTTTAGTAGACTCAAAGACCTTGAAGTACGTGGATGTGGAAATTTAATAAATATCTTTGTGCCCAGTATTATAGGAAGATTGAATGTTCTTAAGACCTTATTGATAAAGGAGTGCAAGTCTGTGCAAGTTGTATTTGAACTTGGAGGAATTGATGTTAGAGGAATACATGACACGTCAGCTGCAACTCAGCTGAGATCTTGTGACTGTCAAAATCTAGAATCAGTTGAAATTGATTCTTGTGAGAATTTGAAAAGTATTTTTCCGGTTTCAGTGGCTAGAAATCTCCAACAATTAGAAAGGCTGATAGTGACGAACTGTGGAGTGGAGGAAATCATTGCAAGAGAGGAGGGACTACAAACAACACCTAAGTTTGTGTTTCCAAAAGTAACAAAAGTGATTTTTAGGAATATGTCCCAACTCACGAATTTCTACCCAGGGATGCATGTGTCCGTCTGGCCATCACTTAATGAGTTGAGGGTGGTACAATGTGCTAAAGTCAAAGTGTTTGCCGAGGAAATCTCAAATTTTCAAGGACATAATGAGTCGGAACGTCTTCTTATCCCGCAGTCTCTCTTTTTAATTGAGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

286

Amino Acids

32.34

Weight (kDa)

6.25

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	67 - 147	4.1e-15	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	156 - 196	4.8e-12	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710
fragaria_vesca	FvH4_4g11500
malus_domestica	MD04G1034700.v1.1
prunus_persica	Prupe.1G186300_v2.0.a1
pyrus_communis	pycom04g02410 pycom04g02880
rosa_chinensis	RchiOBHm_Chr4g0408411
rosa_laevigata	RLG00000008653
rosa_multiflora	Rmu_ssc0000173.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352870
rosa_rugosa	Rorug04G0085100 Rorug04G0085200 Rorug04G0085300 Rorug04G0085400
rosa_samantha	Rh4AG150300 Rh4BG147200 Rh4CG157600 Rh4DG143200
rosa_wichuraiana	Rw4G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	1 cut(s)	830
AcoI	YGGCCR	1 cut(s)	722
AcsI	RAATTY	6 cut(s)	17, 185, 307, 511, 691, 790
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	52, 294, 750
AfiI	CCNNNNNNNGG	2 cut(s)	28, 240
AflII	CTTAAG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	7 cut(s)	185, 290, 349, 404, 494, 517, 797
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	2 cut(s)	446, 457
AluI	AGCT	2 cut(s)	446, 457
Alw26I	GTCTC	4 cut(s)	56, 137, 213, 840
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	6 cut(s)	17, 185, 307, 511, 691, 790
Asp700I	GAANNNNTTC	1 cut(s)	819
AspA2I	CCTAGG	1 cut(s)	191
AvrII	CCTAGG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	31, 733
BciT130I	CCWGG	1 cut(s)	702
BcoDI	GTCTC	4 cut(s)	56, 137, 213, 840
BfaI	CTAG	3 cut(s)	192, 482, 543
BfrI	CTTAAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	1 cut(s)	447
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	702
BmgBI	CACGTC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	702
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	696
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	6 cut(s)	37, 69, 193, 225, 770, 802
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	112, 197
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	5 cut(s)	27, 191, 700, 701, 777
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 240
Bse1I	ACTGG	2 cut(s)	63, 330
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	5 cut(s)	27, 191, 700, 701, 777
BseGI	GGATG	3 cut(s)	23, 305, 711
BseLI	CCNNNNNNNGG	2 cut(s)	28, 240
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	449, 467
BseNI	ACTGG	2 cut(s)	63, 330
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	2 cut(s)	630, 664
BslI	CCNNNNNNNGG	2 cut(s)	28, 240
BsmAI	GTCTC	4 cut(s)	56, 137, 213, 840
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	630, 664
BsnI	GGCC	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	2 cut(s)	450, 466
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	63, 330
BssECI	CCNNGG	5 cut(s)	27, 191, 700, 701, 777
BssMI	GATC	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	27, 191
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	248, 473, 584
BstAFI	CTTAAG	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	453, 458, 633
BstF5I	GGATG	3 cut(s)	23, 305, 711
BstKTI	GATC	1 cut(s)	464
BstMAI	GTCTC	4 cut(s)	56, 137, 213, 840
BstMBI	GATC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	700
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	724
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	23, 305, 711
BtsIMutI	CAGTG	1 cut(s)	543
Csp6I	GTAC	3 cut(s)	51, 293, 749
CviAII	CATG	4 cut(s)	43, 140, 434, 710
CviJI	RGCY	5 cut(s)	446, 457, 542, 568, 724
CviKI_1	RGCY	5 cut(s)	446, 457, 542, 568, 724
CviQI	GTAC	3 cut(s)	51, 293, 749
DdeI	CTNAG	3 cut(s)	453, 458, 633
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	27, 191
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	27, 191
EcoT22I	ATGCAT	1 cut(s)	711
ErhI	CCWWGG	2 cut(s)	27, 191
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	46, 143, 437, 713
FaqI	GGGAC	2 cut(s)	630, 664
FatI	CATG	4 cut(s)	42, 139, 433, 709
FauI	CCCGC	1 cut(s)	837
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	3 cut(s)	10, 312, 718
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	3 cut(s)	192, 482, 543
GluI	GCNGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	1 cut(s)	530
Hin1II	CATG	4 cut(s)	46, 143, 437, 713
HincII	GTYRAC	2 cut(s)	231, 251
HindII	GTYRAC	2 cut(s)	231, 251
HinfI	GANTC	7 cut(s)	4, 77, 125, 276, 485, 500, 809
HpaII	CCGG	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	231, 251, 275
Hpy188I	TCNGA	1 cut(s)	814
Hpy188III	TCNNGA	2 cut(s)	482, 688
Hpy8I	GTNNAC	3 cut(s)	231, 251, 275
HpyAV	CCTTC	1 cut(s)	847
HpyCH4III	ACNGT	3 cut(s)	248, 473, 584
HpyCH4IV	ACGT	4 cut(s)	65, 295, 440, 817
HpyCH4V	TGCA	6 cut(s)	157, 381, 391, 449, 605, 709
HpyF3I	CTNAG	3 cut(s)	453, 458, 633
HpySE526I	ACGT	4 cut(s)	65, 295, 440, 817
Hsp92II	CATG	4 cut(s)	46, 143, 437, 713
Kzo9I	GATC	1 cut(s)	461
LpnPI	CCDG	6 cut(s)	44, 343, 543, 687, 706, 714
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	3 cut(s)	192, 482, 543
MaeII	ACGT	4 cut(s)	65, 295, 440, 817
MaeIII	GTNAC	3 cut(s)	467, 574, 652
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	2 cut(s)	354, 812
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	724
MluNI	TGGCCA	1 cut(s)	724
MlyI	GAGTC	3 cut(s)	119, 270, 818
MmeI	TCCRAC	3 cut(s)	177, 577, 792
MnlI	CCTC	7 cut(s)	404, 419, 586, 604, 607, 735, 772
Mox20I	TGGCCA	1 cut(s)	724
Mph1103I	ATGCAT	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	819
MscI	TGGCCA	1 cut(s)	724
MseI	TTAA	4 cut(s)	311, 357, 732, 845
Msp20I	TGGCCA	1 cut(s)	724
MspA1I	CMGCKG	2 cut(s)	446, 457
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	702
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	702
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	4 cut(s)	46, 143, 437, 713
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	467, 574
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	1 cut(s)	713
PasI	CCCWGGG	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	77, 485, 500
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	3 cut(s)	119, 270, 817
PpsI	GAGTC	3 cut(s)	119, 270, 817
Ppu21I	YACGTR	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	2 cut(s)	446, 457
RsaI	GTAC	3 cut(s)	52, 294, 750
RsaNI	GTAC	3 cut(s)	51, 293, 749
SaqAI	TTAA	4 cut(s)	311, 357, 732, 845
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	1 cut(s)	461
SchI	GAGTC	3 cut(s)	119, 270, 818
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	696
SmlI	CTYRAG	3 cut(s)	127, 212, 356
SmoI	CTYRAG	3 cut(s)	127, 212, 356
SsiI	CCGC	1 cut(s)	830
SspMI	CTAG	3 cut(s)	192, 482, 543
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	2 cut(s)	27, 191
TaaI	ACNGT	3 cut(s)	248, 473, 584
TaiI	ACGT	4 cut(s)	68, 298, 443, 820
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	77, 485, 500
Tru1I	TTAA	4 cut(s)	311, 357, 732, 845
Tru9I	TTAA	4 cut(s)	311, 357, 732, 845
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	467, 574
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	467, 574
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	706
TspRI	CASTG	1 cut(s)	543
Van91I	CCANNNNNTGG	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	6 cut(s)	17, 185, 307, 511, 691, 790
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	713
XmaJI	CCTAGG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	3 cut(s)	192, 482, 543
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.