Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 |
| fragaria_vesca | FvH4_4g11500 |
| malus_domestica | MD04G1034700.v1.1 |
| prunus_persica | Prupe.1G186300_v2.0.a1 |
| pyrus_communis | pycom04g02410 pycom04g02880 |
| rosa_chinensis | RchiOBHm_Chr4g0408411 |
| rosa_laevigata | RLG00000008653 |
| rosa_multiflora | Rmu_ssc0000173.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00352870 |
| rosa_rugosa | Rorug04G0085100 Rorug04G0085200 Rorug04G0085300 Rorug04G0085400 |
| rosa_samantha | Rh4AG150300 Rh4BG147200 Rh4CG157600 Rh4DG143200 |
| rosa_wichuraiana | Rw4G012270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 418 |
| AcuI | CTGAAG | 1 cut(s) | 294 |
| AfaI | GTAC | 2 cut(s) | 184, 501 |
| AgsI | TTSAA | 3 cut(s) | 341, 404, 468 |
| AhlI | ACTAGT | 1 cut(s) | 470 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 438, 470 |
| AluBI | AGCT | 1 cut(s) | 344 |
| AluI | AGCT | 1 cut(s) | 344 |
| AoxI | GGCC | 1 cut(s) | 418 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 17, 453 |
| AspS9I | GGNCC | 2 cut(s) | 106, 322 |
| AvaII | GGWCC | 2 cut(s) | 106, 322 |
| AxyI | CCTNAGG | 1 cut(s) | 102 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 158, 365 |
| BciVI | GTATCC | 1 cut(s) | 228 |
| BcuI | ACTAGT | 1 cut(s) | 470 |
| BfaI | CTAG | 2 cut(s) | 471, 517 |
| BfuI | GTATCC | 1 cut(s) | 228 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| BmcAI | AGTACT | 1 cut(s) | 501 |
| Bme18I | GGWCC | 2 cut(s) | 106, 322 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 322 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BmsI | GCATC | 3 cut(s) | 45, 306, 397 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpmI | CTGGAG | 1 cut(s) | 480 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 438, 468 |
| Bse1I | ACTGG | 2 cut(s) | 414, 497 |
| Bse21I | CCTNAGG | 1 cut(s) | 102 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| BseGI | GGATG | 1 cut(s) | 457 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 2 cut(s) | 60, 93 |
| BseNI | ACTGG | 2 cut(s) | 414, 497 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| BshFI | GGCC | 1 cut(s) | 420 |
| BsnI | GGCC | 1 cut(s) | 420 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspANI | GGCC | 1 cut(s) | 420 |
| BspCNI | CTCAG | 2 cut(s) | 61, 94 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrI | ACTGG | 2 cut(s) | 414, 497 |
| BssMI | GATC | 1 cut(s) | 133 |
| Bst4CI | ACNGT | 1 cut(s) | 199 |
| Bst6I | CTCTTC | 1 cut(s) | 270 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 1 cut(s) | 492 |
| BstDEI | CTNAG | 3 cut(s) | 69, 102, 119 |
| BstF5I | GGATG | 1 cut(s) | 457 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 56 |
| BstNSI | RCATGY | 1 cut(s) | 494 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| Bsu36I | CCTNAGG | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 420 |
| BtsCI | GGATG | 1 cut(s) | 457 |
| BtsIMutI | CAGTG | 2 cut(s) | 66, 421 |
| Cac8I | GCNNGC | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 322 |
| Csp6I | GTAC | 2 cut(s) | 183, 500 |
| CviAII | CATG | 5 cut(s) | 146, 170, 390, 422, 491 |
| CviJI | RGCY | 5 cut(s) | 125, 302, 344, 420, 511 |
| CviKI_1 | RGCY | 5 cut(s) | 125, 302, 344, 420, 511 |
| CviQI | GTAC | 2 cut(s) | 183, 500 |
| DdeI | CTNAG | 3 cut(s) | 69, 102, 119 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| EaeI | YGGCCR | 1 cut(s) | 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 270 |
| EarI | CTCTTC | 1 cut(s) | 270 |
| Eco47I | GGWCC | 2 cut(s) | 106, 322 |
| Eco57I | CTGAAG | 1 cut(s) | 294 |
| Eco81I | CCTNAGG | 1 cut(s) | 102 |
| FaeI | CATG | 5 cut(s) | 149, 173, 393, 425, 494 |
| FatI | CATG | 5 cut(s) | 145, 169, 389, 421, 490 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 1 cut(s) | 444 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 2 cut(s) | 471, 517 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsuI | CTGGAG | 1 cut(s) | 480 |
| HaeIII | GGCC | 1 cut(s) | 420 |
| Hin1II | CATG | 5 cut(s) | 149, 173, 393, 425, 494 |
| HinfI | GANTC | 2 cut(s) | 227, 437 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 1 cut(s) | 348 |
| Hpy188III | TCNNGA | 2 cut(s) | 404, 479 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| HpyAV | CCTTC | 3 cut(s) | 246, 426, 443 |
| HpyCH4III | ACNGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 50, 319, 410 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 56 |
| HpyF3I | CTNAG | 3 cut(s) | 69, 102, 119 |
| Hsp92II | CATG | 5 cut(s) | 149, 173, 393, 425, 494 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LmnI | GCTCC | 1 cut(s) | 499 |
| LpnPI | CCDG | 7 cut(s) | 114, 122, 209, 305, 383, 427, 510 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| LweI | GCATC | 3 cut(s) | 45, 306, 397 |
| MaeI | CTAG | 2 cut(s) | 471, 517 |
| MaeIII | GTNAC | 2 cut(s) | 64, 280 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 4 cut(s) | 25, 173, 287, 325 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 4 cut(s) | 86, 149, 326, 483 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MnlI | CCTC | 6 cut(s) | 64, 97, 213, 266, 271, 292 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MroXI | GAANNNNTTC | 2 cut(s) | 17, 453 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 1 cut(s) | 351 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 56 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 5 cut(s) | 149, 173, 393, 425, 494 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NspI | RCATGY | 1 cut(s) | 494 |
| PaeI | GCATGC | 1 cut(s) | 494 |
| PdmI | GAANNNNTTC | 2 cut(s) | 17, 453 |
| PfeI | GAWTC | 2 cut(s) | 227, 437 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 2 cut(s) | 106, 322 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 175, 207 |
| RsaI | GTAC | 2 cut(s) | 184, 501 |
| RsaNI | GTAC | 2 cut(s) | 183, 500 |
| SaqAI | TTAA | 1 cut(s) | 351 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 2 cut(s) | 106, 322 |
| ScaI | AGTACT | 1 cut(s) | 501 |
| SetI | ASST | 6 cut(s) | 103, 188, 258, 282, 346, 402 |
| SfaNI | GCATC | 3 cut(s) | 45, 306, 397 |
| SinI | GGWCC | 2 cut(s) | 106, 322 |
| SpeI | ACTAGT | 1 cut(s) | 470 |
| SphI | GCATGC | 1 cut(s) | 494 |
| Sse9I | AATT | 4 cut(s) | 86, 149, 326, 483 |
| SspI | AATATT | 1 cut(s) | 141 |
| SspMI | CTAG | 2 cut(s) | 471, 517 |
| TaaI | ACNGT | 1 cut(s) | 199 |
| TaqI | TCGA | 1 cut(s) | 136 |
| TasI | AATT | 4 cut(s) | 86, 149, 326, 483 |
| TatI | WGTACW | 1 cut(s) | 499 |
| TfiI | GAWTC | 2 cut(s) | 227, 437 |
| Tru1I | TTAA | 1 cut(s) | 351 |
| Tru9I | TTAA | 1 cut(s) | 351 |
| TscAI | CASTG | 2 cut(s) | 73, 421 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 3 cut(s) | 162, 438, 446 |
| TspRI | CASTG | 2 cut(s) | 73, 421 |
| VpaK11BI | GGWCC | 2 cut(s) | 106, 322 |
| XceI | RCATGY | 1 cut(s) | 494 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 152 |
| XmnI | GAANNNNTTC | 2 cut(s) | 17, 453 |
| XspI | CTAG | 2 cut(s) | 471, 517 |
| ZrmI | AGTACT | 1 cut(s) | 501 |