Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003234

Physical Location & Seq

Genomic Coordinates Reverse (-)

13102260 .. 13104329

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTCCTCAGAGCCGAAGAACAAAGCCAGCTACAGCTCGTTGAACTCGAAGACATTGATGATGAAGACGACCTCTTCGAAGCGATCGATAAGTGTAAGCTTCATGAACCTTCGGTTCCGTTCAATTTCCGTTACATACTTCGATTTTACATTTCGATCATTTCGCACTGCTTCCTACTAACATGCATGGAGGGAATGGAAATGTTGCTTAAATTGATACTGAGGGAATTTTGTGCCTTGTTTACATTATTGGTTTTGGGAGGTTTTGAAGAATCAAAGTATGTTACTGAAAGGAAATGGGCTAGTGCTCCAGATGGTACTCAGATTCCAATATCAATTGTTTACAGGAAGGACATTATAAAGCTTGATGGATCTGATCCATTGCTACTCTATGGCTATGGTTCTTACGAGGGTAAACCATGGAGAATTTTGTTGGATCGGGGTTTTATTTATGCTATAGCTCATATTCGTGGTGGTGGTGAAATGGGTAGGAAATGCTCCAGAATTGACATTATTTCTCATTTCTTTCTCTACAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

180

Amino Acids

20.92

Weight (kDa)

5.27

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710 AT1G06710
fragaria_vesca	FvH4_4g11500
malus_domestica	MD04G1034700.v1.1
prunus_persica	Prupe.1G186300_v2.0.a1
pyrus_communis	pycom04g02410 pycom04g02880
rosa_chinensis	RchiOBHm_Chr4g0408411
rosa_laevigata	RLG00000008653
rosa_multiflora	Rmu_ssc0000173.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352870
rosa_rugosa	Rorug04G0085100 Rorug04G0085200 Rorug04G0085300 Rorug04G0085400
rosa_samantha	Rh4AG150300 Rh4BG147200 Rh4CG157600 Rh4DG143200
rosa_wichuraiana	Rw4G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AclWI	GGATC	3 cut(s)	371, 379, 444
AcsI	RAATTY	2 cut(s)	227, 426
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	44, 124, 269
AluBI	AGCT	5 cut(s)	31, 37, 100, 364, 461
AluI	AGCT	5 cut(s)	31, 37, 100, 364, 461
Alw21I	GWGCWC	1 cut(s)	310
AlwI	GGATC	3 cut(s)	371, 379, 444
ApoI	RAATTY	2 cut(s)	227, 426
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	57, 72
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	2 cut(s)	308, 362
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	3 cut(s)	32, 456, 532
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	57, 72
BpmI	CTGGAG	2 cut(s)	294, 484
Bpu14I	TTCGAA	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	3 cut(s)	22, 212, 335
Bsh1285I	CGRYCG	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	310
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	84, 156, 371, 376, 436
Bsp19I	CCATGG	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	21, 213, 334
BspDI	ATCGAT	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	371, 379, 444
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	5 cut(s)	84, 156, 371, 376, 436
BssT1I	CCWWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	8, 221, 321
BstDSI	CCRYGG	1 cut(s)	419
BstKTI	GATC	5 cut(s)	87, 159, 374, 379, 439
BstMBI	GATC	5 cut(s)	84, 156, 371, 376, 436
BstMCI	CGRYCG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	186
BstSFI	CTRYAG	3 cut(s)	32, 456, 532
BstV2I	GAAGAC	2 cut(s)	57, 72
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	104, 183, 187, 420
CviJI	RGCY	9 cut(s)	14, 27, 31, 37, 100, 302, 364, 396, 461
CviKI_1	RGCY	9 cut(s)	14, 27, 31, 37, 100, 302, 364, 396, 461
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	8, 221, 321
DpnI	GATC	5 cut(s)	86, 158, 373, 378, 438
DpnII	GATC	5 cut(s)	84, 156, 371, 376, 436
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	107, 186, 190, 423
FatI	CATG	4 cut(s)	103, 182, 186, 419
FspBI	CTAG	1 cut(s)	303
GsuI	CTGGAG	2 cut(s)	294, 484
Hin1II	CATG	4 cut(s)	107, 186, 190, 423
HindIII	AAGCTT	2 cut(s)	98, 362
HinfI	GANTC	2 cut(s)	272, 325
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	3 cut(s)	243, 343, 416
Hpy188I	TCNGA	3 cut(s)	11, 324, 376
Hpy188III	TCNNGA	3 cut(s)	104, 311, 501
Hpy8I	GTNNAC	3 cut(s)	243, 343, 416
HpyAV	CCTTC	2 cut(s)	120, 343
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	8, 221, 321
Hsp92II	CATG	4 cut(s)	107, 186, 190, 423
Kzo9I	GATC	5 cut(s)	84, 156, 371, 376, 436
LmnI	GCTCC	2 cut(s)	313, 503
LpnPI	CCDG	4 cut(s)	41, 324, 331, 514
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	131, 283
MalI	GATC	5 cut(s)	86, 158, 373, 378, 438
MboI	GATC	5 cut(s)	84, 156, 371, 376, 436
MboII	GAAGA	5 cut(s)	29, 62, 67, 77, 281
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	6 cut(s)	124, 212, 227, 336, 426, 504
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	17, 83, 184, 216, 254, 403
Mph1103I	ATGCAT	1 cut(s)	188
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	468
MunI	CAATTG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	5 cut(s)	84, 156, 371, 376, 436
NlaIII	CATG	4 cut(s)	107, 186, 190, 423
NlaIV	GGNNCC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 75, 84
PfeI	GAWTC	2 cut(s)	272, 325
Ple19I	CGATCG	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	371
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	5 cut(s)	84, 156, 371, 376, 436
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	33, 39, 75, 102, 112, 265, 366, 463
SfcI	CTRYAG	3 cut(s)	32, 456, 532
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	6 cut(s)	124, 212, 227, 336, 426, 504
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	419
TaqI	TCGA	5 cut(s)	48, 78, 87, 142, 155
TasI	AATT	6 cut(s)	124, 212, 227, 336, 426, 504
TfiI	GAWTC	2 cut(s)	272, 325
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	78, 92, 120
TspGWI	ACGGA	2 cut(s)	108, 119
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	227, 426
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.