Rh4CG157600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003234
Physical Location & Seq
Reverse (-)
34635705 .. 34639075
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG157600.1

Sequence Viewer

Length: 2967 bp
ATGAGCAGAAGACACTTCAGCTCTCTACTCTTCAACTCCATCTCTTCTTCTCCCCTTTTCTCCAGAAACCCATCCCAATCCTTCGTTTCTTCACTCAAATCATACCCCCAAAATCTCAATTTCTGCCGCCAATGTCTCCTCTCCAGATTCCTCGGCACCTCTCCGCCGGACAATCTCGACGGCCTCCTCGATCCCCAGGACTTCTCTACGCCGGAGACCCACTCTCTTTCCGCACAAGACTTTGCCTTTTTGCGCGACTCGCCGAAACTTGACCCCGATAAGTGTTCTAACGACGCCGTTTTGATTTCTAATGCCATTAGGAATAGTTCTGATTCATTTGGGGATGAAACCCACAAGTTTCTTAGGAGGTTTAGGGATAATCTGAATGAAACTTTGGTGGTGCAGGTTTTGAGTCTTGTAAAGAGTCCTGAGTTGGGTGTCAAGTTTTTCATTTGGGCTGGTAGACAAATTGGGTATAGTCATACTGCTTCTGTATATAATGCATTGTTGGAGTTACTGGAGTTTGGTAGTAGTGACAGAGTACCGGAGCATTTTTTGCGAGAAATTATGGGTGATGATAGAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTCGCAAGTGTTGCCGAAATGGGTTGTGGAATGTAGCTTTGGAAGAGCTCGGGACGCTTAAGGATTTCGGGTACAGGCCGAGTCAAGCAACTTACAATGCTTTGGTTCAGGTGTTTTTGAGAGCTGATAGGCTGGACACAGCACACTTGGTTCATGGGGAGATGTTAGAGTTGGGGTTTAAGATGGACGAGTATACATTAGGTTGTTTCGGTCTTGCCCTGTGCAAAGCTGGCAGGTGGAAGGAGGGACTTGCATTGATTGAGAAGGAAGATTTTGTGCCCAATACTGTTCTATATACCAAGATGATTTCTGGGTTGTGTGAGGCTTCACTTTTTGAGGAAGCTATGGATTTGTTGAGCAGAATGCGCTGTAATTCTTGCATTCCTAATGTTGTAACCTATAGGATTTTGCTTTGTGGATGTTTGAAGAAAAAACAGCTTGGCAGGTGCAAGAGAATTCTTAGTATGATGATCACGGAAGGTTGTTATCCTAGCCCTGGGATATTTAATTCTCTTGTTCATGCTTATTGCAGATCAGGAGATTACTCTTATGCTTATAAGTTGCTAAAGAAAATGGTCAGGTGTGGGTGCCGGCCAGGCTATGTGGTTTACAATATCTTGATTGGTAGTATCTGTGGACACGAAGAATTACCTACCTTAGATATGCTAGACATGGCTGAAAAAGCTTATGGTGAGATGCTTAATGCAGGGGTTGTTTTAAATAAGGTAAATGTAAGCAATTTTGTGCGATGTCTTTGTGGCCATGGAAAATTTGACAAAGCCTACAAGGTCATCAATGAAATGATGAGCAAGGGTTTTGTTCCTGACACTAGTACATACTCTAAAGTTATTGGCTTTTTGTGCAATGCCTCCAAGGTAGAACAAGCATTATTGTTGTTTGAAGAAATGAAGCAAAATGGTGTTGTTCCTGATGTCTACACCTATACCATCTTAATTGATAGTTTTTCTAAGGCTGGCCTTATTGAACAGGCTCGGAACTGGTTCAATGAAATGGTAGGAAATGGTTGTGCACCAAACGTGGTAACTTATACTGCTCTTATACATGCATACCTTAAAGCAAGGAAGGTGCCTGATGCAAATCAACTCTTTGAGATGATGTTGACTCAAGGTTGCATTCCTAATGCTATTACTTATAGTGCTTTGATCGATGGCCATTGTAAAGCTGGAGAGACTGAAAAGGCTTGCCTGATTTATGCAAGAATGAGAGGTAATGTGGATGTCCCTGATGTTGATATGTATTTCAAAATTGATGATCAGAGTTTGAAAGAACCTAATGTTCATACTTATGGAGCGTTGGTGGATGGTTTATGTAAAGCCCACAAGGTCAGAGAGGCTGGTGACTTATTGGATGCTATGTTGGTAGAAGGTTGTGAACCTAACCACATTGTTTATGATGCTCTTATAGATGGATTTTGCAAGTCGGGGAAGCTCGATGAAGCACAAAAGGTGTTTGCTAAAATGTCAGAGCATGGGTATAGTCCAAATGTGTATACGTACAGCTCTTTGATTGACAGGTTGTTCAAGGATAAAAGACTGGATCTTGTTTTAAAAGTCCTGTCTAAAATGTTAGAAAACTCTTGTTCACCAAATGTTGTTATCTATACAGAGATGGTCGATGGCCTTTGTAAGGTTGGAAAGACAGATGAAGCTTATAAGCTTATGCTAATGATGGAAGAAAAAGGATGTAATCCAAATGTTGTGACTTACACTGCGATGATAGATGGCCTTGGGAAAGCAGGCAAAATCGACAAATGTCTTGAGCTCTTTAAAGCAATGAGCTCCAAGGGTTGTGCTCCCAATTTTATCACCTACAAGGTTTTGATAAACCATTGCTGTGCAATTGGTCTTTTGGATGAAGCTCATAAACTTTTGGATGAAATGAAACAAACATATTGGCCAAAGCATTTGGCAGGCTACCGTAAAGTTATTGAAGGTTACAACCGAGAATTCATAGCCTCACATGGGCTTTTAAATGAGATAAGTGAGTGCGACCCATTGCCAATCGTTCACATATACAGAGTTTTGGTTGATAATTTTGTAAAGGCTGGAAGACTGGAAGTGGCTCTGGAGCTGCATGAAGAGATTTCTTCATCTACTCCTTTTACATCTGTGAACAGGGATATGTATACTTTACTGATCGAGAACCTATCACATGCAAATAAGGCTGATAAGGCACTGCAGATGTTTGCAGAAATGATAAGGCTGGGTGGTTATCCAGAGCTGAGTACATTTTTCCACCTCATCAAAGGGCTTATTAAAATTAATAGGTGGGATGAAGCTCTTCAACTATCGGATAGCATATGCCAGATGGATATCCAATGGGTTTCTGCGTGA

Protein Analysis

988

Amino Acids

110.98

Weight (kDa)

6.34

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 296 - 327 2.8e-06 PPR repeat
PPR_2 PF13041 298 - 347 4.9e-14 PPR repeat family
PPR_1 PF12854 365 - 397 1.7e-06 PPR repeat
PPR_3 PF13812 369 - 416 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 372 - 416 2.9e-09 PPR repeat family
PPR PF01535 372 - 401 3.8e-07 PPR repeat
PPR_long PF17177 381 - 530 5.9e-11 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 452 - 493 7.7e-09 PPR repeat family
PPR_3 PF13812 467 - 526 4.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 483 - 528 4.3e-14 PPR repeat family
PPR_long PF17177 498 - 614 1.5e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 510 - 543 5.9e-09 PPR repeat
PPR PF01535 517 - 547 2.4e-07 PPR repeat
PPR_2 PF13041 521 - 561 9e-11 PPR repeat family
PPR_3 PF13812 539 - 594 1.3e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 545 - 577 4.5e-07 PPR repeat
PPR_2 PF13041 549 - 598 5e-17 PPR repeat family
PPR PF01535 552 - 582 8.1e-06 PPR repeat
PPR_1 PF12854 581 - 612 7.5e-09 PPR repeat
PPR_1 PF12854 634 - 663 7.8e-07 PPR repeat
PPR_2 PF13041 635 - 675 8.3e-08 PPR repeat family
PPR_3 PF13812 659 - 715 4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 667 - 699 1.2e-12 PPR repeat
PPR_2 PF13041 672 - 719 6.3e-15 PPR repeat family
PPR PF01535 674 - 702 4.6e-07 PPR repeat
PPR_3 PF13812 693 - 746 1.2e-08 Pentatricopeptide repeat domain
PPR_long PF17177 721 - 843 3.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 729 - 788 3.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 737 - 768 1.4e-08 PPR repeat
PPR_2 PF13041 740 - 789 1.2e-16 PPR repeat family
PPR_3 PF13812 767 - 822 1.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 771 - 803 1.5e-10 PPR repeat
PPR_2 PF13041 775 - 823 6e-17 PPR repeat family
PPR PF01535 778 - 808 3.1e-09 PPR repeat
PPR_1 PF12854 806 - 839 1.1e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1170, 2286
AarI CACCTGC 2 cut(s) 837, 1047
Acc36I ACCTGC 3 cut(s) 394, 837, 1047
AccB1I GGYRCC 3 cut(s) 155, 1200, 1699
AccI GTMKAC 5 cut(s) 463, 806, 1548, 2123, 2759
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 127, 164, 231
AclWI GGATC 2 cut(s) 185, 2178
AcoI YGGCCR 4 cut(s) 1205, 1372, 1783, 2528
AcsI RAATTY 3 cut(s) 1068, 1382, 2579
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 5 cut(s) 543, 686, 1447, 2129, 2860
AfiI CCNNNNNNNGG 4 cut(s) 434, 1109, 2260, 2595
AflII CTTAAG 1 cut(s) 671
AhlI ACTAGT 1 cut(s) 1442
AjnI CCWGG 3 cut(s) 195, 1108, 1207
AjuI GAANNNNNNNTTGG 4 cut(s) 377, 409, 635, 667
Alw21I GWGCWC 5 cut(s) 663, 1645, 2397, 2414, 2428
Alw26I GTCTC 3 cut(s) 140, 209, 1796
Alw44I GTGCAC 1 cut(s) 1641
AlwI GGATC 2 cut(s) 185, 2178
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 9 cut(s) 181, 689, 1205, 1372, 1588, 1783, 2251, 2356, 2528
ApaLI GTGCAC 1 cut(s) 1641
ApeKI GCWGC 1 cut(s) 2704
ApoI RAATTY 3 cut(s) 1068, 1382, 2579
AseI ATTAAT 1 cut(s) 2895
Asp700I GAANNNNTTC 2 cut(s) 1613, 2913
AspLEI GCGC 2 cut(s) 255, 981
AsuHPI GGTGA 5 cut(s) 584, 1316, 1982, 2208, 2431
AvaI CYCGRG 1 cut(s) 662
BaeGI GKGCMC 2 cut(s) 894, 1645
BalI TGGCCA 3 cut(s) 1374, 1785, 2530
BanI GGYRCC 3 cut(s) 155, 1200, 1699
BanII GRGCYC 3 cut(s) 663, 2397, 2414
BbsI GAAGAC 2 cut(s) 16, 2689
Bbv12I GWGCWC 5 cut(s) 663, 1645, 2397, 2414, 2428
BbvI GCAGC 1 cut(s) 2691
BceAI ACGGC 2 cut(s) 196, 281
BciT130I CCWGG 3 cut(s) 197, 1110, 1209
BclI TGATCA 2 cut(s) 1083, 1885
BcoDI GTCTC 3 cut(s) 140, 209, 1796
BcuI ACTAGT 1 cut(s) 1442
BfaI CTAG 3 cut(s) 1104, 1280, 1443
BfmI CTRYAG 2 cut(s) 1012, 2810
BfrI CTTAAG 1 cut(s) 671
BfuAI ACCTGC 3 cut(s) 394, 837, 1047
BglI GCCNNNNNGGC 1 cut(s) 1209
BisI GCNGC 2 cut(s) 127, 2705
BlsI GCNGC 2 cut(s) 128, 2706
Bme1390I CCNGG 3 cut(s) 197, 1110, 1209
BmeT110I CYCGRG 1 cut(s) 662
BmiI GGNNCC 3 cut(s) 157, 1202, 1701
BmrFI CCNGG 3 cut(s) 197, 1110, 1209
BmsI GCATC 4 cut(s) 1299, 1696, 1972, 2017
BoxI GACNNNNGTC 1 cut(s) 2385
BpiI GAAGAC 2 cut(s) 16, 2689
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 5 cut(s) 46, 127, 539, 1818, 2720
BpuEI CTTGAG 2 cut(s) 1722, 2411
Bsa29I ATCGAT 1 cut(s) 1779
BsaAI YACGTR 1 cut(s) 2127
BsaBI GATNNNNATC 2 cut(s) 1710, 2945
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 8 cut(s) 151, 195, 1108, 1109, 1375, 1485, 2359, 2415
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 1914, 1944
Bsc4I CCNNNNNNNGG 4 cut(s) 434, 1109, 2260, 2595
Bse118I RCCGGY 1 cut(s) 1203
Bse1I ACTGG 4 cut(s) 522, 1616, 2172, 2691
Bse3DI GCAATG 4 cut(s) 1483, 2412, 2461, 2627
Bse8I GATNNNNATC 2 cut(s) 1710, 2945
BseBI CCWGG 3 cut(s) 197, 1110, 1209
BseCI ATCGAT 1 cut(s) 1779
BseDI CCNNGG 8 cut(s) 151, 195, 1108, 1109, 1375, 1485, 2359, 2415
BseJI GATNNNNATC 2 cut(s) 1710, 2945
BseLI CCNNNNNNNGG 4 cut(s) 434, 1109, 2260, 2595
BseMI GCAATG 4 cut(s) 1483, 2412, 2461, 2627
BseMII CTCAG 2 cut(s) 420, 2846
BseNI ACTGG 4 cut(s) 522, 1616, 2172, 2691
BseRI GAGGAG 2 cut(s) 128, 176
BseSI GKGCMC 2 cut(s) 894, 1645
BseXI GCAGC 1 cut(s) 2691
BseYI CCCAGC 1 cut(s) 2836
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 9 cut(s) 183, 691, 1207, 1374, 1590, 1785, 2253, 2358, 2530
BshNI GGYRCC 3 cut(s) 155, 1200, 1699
BshVI ATCGAT 1 cut(s) 1779
BsiHKAI GWGCWC 5 cut(s) 663, 1645, 2397, 2414, 2428
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 4 cut(s) 167, 212, 545, 1204
BslFI GGGAC 3 cut(s) 679, 873, 1838
BslI CCNNNNNNNGG 4 cut(s) 434, 1109, 2260, 2595
BsmAI GTCTC 3 cut(s) 140, 209, 1796
BsmFI GGGAC 3 cut(s) 679, 873, 1838
BsmI GAATGC 3 cut(s) 981, 993, 1746
BsnI GGCC 9 cut(s) 183, 691, 1207, 1374, 1590, 1785, 2253, 2358, 2530
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 6 cut(s) 663, 894, 1645, 2397, 2414, 2428
Bsp143I GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
Bsp19I CCATGG 1 cut(s) 1375
BspACI CCGC 3 cut(s) 127, 164, 231
BspANI GGCC 9 cut(s) 183, 691, 1207, 1374, 1590, 1785, 2253, 2358, 2530
BspCNI CTCAG 2 cut(s) 421, 2847
BspDI ATCGAT 1 cut(s) 1779
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 157, 1202, 1701
BspMAI CTGCAG 1 cut(s) 2814
BspMI ACCTGC 3 cut(s) 394, 837, 1047
BspPI GGATC 2 cut(s) 185, 2178
BspQI GCTCTTC 2 cut(s) 651, 2919
BspT107I GGYRCC 3 cut(s) 155, 1200, 1699
BspTI CTTAAG 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 4 cut(s) 1483, 2412, 2461, 2627
BsrFI RCCGGY 1 cut(s) 1203
BsrI ACTGG 4 cut(s) 522, 1616, 2172, 2691
BssAI RCCGGY 1 cut(s) 1203
BssECI CCNNGG 8 cut(s) 151, 195, 1108, 1109, 1375, 1485, 2359, 2415
BssMI GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
BssNAI GTATAC 3 cut(s) 807, 2124, 2760
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 4 cut(s) 1375, 1485, 2359, 2415
Bst1107I GTATAC 3 cut(s) 807, 2124, 2760
Bst2UI CCWGG 3 cut(s) 197, 1110, 1209
Bst4CI ACNGT 2 cut(s) 901, 2552
Bst6I CTCTTC 5 cut(s) 35, 49, 651, 2706, 2919
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 671
BstAPI GCANNNNNTGC 2 cut(s) 556, 624
BstBAI YACGTR 1 cut(s) 2127
BstC8I GCNNGC 6 cut(s) 844, 1205, 1588, 1816, 2371, 2545
BstDEI CTNAG 6 cut(s) 362, 429, 1073, 1270, 1581, 2855
BstDSI CCRYGG 1 cut(s) 1375
BstENI CCTNNNNNAGG 1 cut(s) 2258
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 2 cut(s) 255, 981
BstKTI GATC 7 cut(s) 193, 1086, 1148, 1779, 1888, 2173, 2772
BstMAI GTCTC 3 cut(s) 140, 209, 1796
BstMBI GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
BstNI CCWGG 3 cut(s) 197, 1110, 1209
BstNSI RCATGY 2 cut(s) 1679, 2789
BstPAI GACNNNNGTC 1 cut(s) 2385
BstSCI CCNGG 3 cut(s) 195, 1108, 1207
BstSFI CTRYAG 2 cut(s) 1012, 2810
BstSLI GKGCMC 2 cut(s) 894, 1645
BstSNI TACGTA 1 cut(s) 2127
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 2691
BstV2I GAAGAC 2 cut(s) 16, 2689
BstX2I RGATCY 1 cut(s) 2170
BstYI RGATCY 1 cut(s) 2170
BstZ17I GTATAC 3 cut(s) 807, 2124, 2760
Bsu15I ATCGAT 1 cut(s) 1779
BsuRI GGCC 9 cut(s) 183, 691, 1207, 1374, 1590, 1785, 2253, 2358, 2530
BsuTUI ATCGAT 1 cut(s) 1779
BtgI CCRYGG 1 cut(s) 1375
BtgZI GCGATG 2 cut(s) 1375, 2360
BtsI GCAGTG 2 cut(s) 2340, 2807
BtsIMutI CAGTG 2 cut(s) 2340, 2807
BveI ACCTGC 3 cut(s) 394, 837, 1047
Cac8I GCNNGC 6 cut(s) 844, 1205, 1588, 1816, 2371, 2545
CfoI GCGC 2 cut(s) 255, 981
Cfr10I RCCGGY 1 cut(s) 1203
ClaI ATCGAT 1 cut(s) 1779
CseI GACGC 2 cut(s) 302, 676
Csp6I GTAC 5 cut(s) 542, 685, 1446, 2128, 2859
CviAII CATG 9 cut(s) 767, 1133, 1285, 1376, 1676, 2102, 2594, 2708, 2786
CviQI GTAC 5 cut(s) 542, 685, 1446, 2128, 2859
DdeI CTNAG 6 cut(s) 362, 429, 1073, 1270, 1581, 2855
DpnI GATC 7 cut(s) 192, 1085, 1147, 1778, 1887, 2172, 2771
DpnII GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
DraI TTTAAA 4 cut(s) 1332, 2181, 2401, 2604
EaeI YGGCCR 4 cut(s) 1205, 1372, 1783, 2528
Eam1104I CTCTTC 5 cut(s) 35, 49, 651, 2706, 2919
EarI CTCTTC 5 cut(s) 35, 49, 651, 2706, 2919
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 3 cut(s) 661, 2395, 2412
Eco105I TACGTA 1 cut(s) 2127
Eco130I CCWWGG 4 cut(s) 1375, 1485, 2359, 2415
Eco24I GRGCYC 3 cut(s) 663, 2397, 2414
Eco31I GGTCTC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 2947
Eco53kI GAGCTC 3 cut(s) 661, 2395, 2412
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 3 cut(s) 661, 2395, 2412
EcoNI CCTNNNNNAGG 1 cut(s) 2258
EcoRI GAATTC 2 cut(s) 1068, 2579
EcoRII CCWGG 3 cut(s) 195, 1108, 1207
EcoRV GATATC 1 cut(s) 2947
EcoT14I CCWWGG 4 cut(s) 1375, 1485, 2359, 2415
EcoT22I ATGCAT 2 cut(s) 505, 1681
EcoT38I GRGCYC 3 cut(s) 663, 2397, 2414
ErhI CCWWGG 4 cut(s) 1375, 1485, 2359, 2415
FaeI CATG 9 cut(s) 770, 1136, 1288, 1379, 1679, 2105, 2597, 2711, 2789
FaqI GGGAC 3 cut(s) 679, 873, 1838
FatI CATG 9 cut(s) 766, 1132, 1284, 1375, 1675, 2101, 2593, 2707, 2785
FauNDI CATATG 1 cut(s) 2933
FbaI TGATCA 2 cut(s) 1083, 1885
FblI GTMKAC 5 cut(s) 463, 806, 1548, 2123, 2759
Fnu4HI GCNGC 2 cut(s) 127, 2705
FriOI GRGCYC 3 cut(s) 663, 2397, 2414
Fsp4HI GCNGC 2 cut(s) 127, 2705
FspBI CTAG 3 cut(s) 1104, 1280, 1443
GlaI GCGC 2 cut(s) 254, 980
GluI GCNGC 2 cut(s) 127, 2705
GsaI CCCAGC 1 cut(s) 2840
GsuI CTGGAG 5 cut(s) 46, 127, 539, 1818, 2720
HaeIII GGCC 9 cut(s) 183, 691, 1207, 1374, 1590, 1785, 2253, 2358, 2530
HapII CCGG 4 cut(s) 167, 212, 545, 1204
HgaI GACGC 2 cut(s) 302, 676
HhaI GCGC 2 cut(s) 255, 981
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 9 cut(s) 770, 1136, 1288, 1379, 1679, 2105, 2597, 2711, 2789
Hin6I GCGC 2 cut(s) 253, 979
HinP1I GCGC 2 cut(s) 253, 979
HincII GTYRAC 1 cut(s) 1734
HindII GTYRAC 1 cut(s) 1734
HindIII AAGCTT 3 cut(s) 1296, 2280, 2288
HinfI GANTC 8 cut(s) 147, 257, 332, 412, 424, 613, 694, 1735
HpaII CCGG 4 cut(s) 167, 212, 545, 1204
HphI GGTGA 5 cut(s) 584, 1316, 1982, 2208, 2431
Hpy188I TCNGA 7 cut(s) 331, 384, 1608, 1890, 1961, 2098, 2926
Hpy99I CGWCG 2 cut(s) 182, 296
HpyAV CCTTC 7 cut(s) 91, 847, 871, 1085, 1690, 1991, 2558
HpyCH4III ACNGT 2 cut(s) 901, 2552
HpyCH4IV ACGT 2 cut(s) 1650, 2126
HpyF3I CTNAG 6 cut(s) 362, 429, 1073, 1270, 1581, 2855
HpySE526I ACGT 2 cut(s) 1650, 2126
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 9 cut(s) 770, 1136, 1288, 1379, 1679, 2105, 2597, 2711, 2789
HspAI GCGC 2 cut(s) 253, 979
KroI GCCGGC 1 cut(s) 1203
KroNI GCCGGC 1 cut(s) 1205
Ksp22I TGATCA 2 cut(s) 1083, 1885
Kzo9I GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
LguI GCTCTTC 2 cut(s) 651, 2919
LmnI GCTCC 5 cut(s) 547, 1922, 2417, 2431, 2701
Lsp1109I GCAGC 1 cut(s) 2691
LweI GCATC 4 cut(s) 1299, 1696, 1972, 2017
MaeI CTAG 3 cut(s) 1104, 1280, 1443
MaeII ACGT 2 cut(s) 1650, 2126
MaeIII GTNAC 7 cut(s) 513, 533, 1006, 1654, 1970, 2332, 2567
MalI GATC 7 cut(s) 192, 1085, 1147, 1778, 1887, 2172, 2771
MboI GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
MfeI CAATTG 1 cut(s) 2472
MflI RGATCY 1 cut(s) 2170
MhlI GDGCHC 6 cut(s) 663, 894, 1645, 2397, 2414, 2428
MlsI TGGCCA 3 cut(s) 1374, 1785, 2530
MluNI TGGCCA 3 cut(s) 1374, 1785, 2530
MlyI GAGTC 5 cut(s) 251, 421, 433, 703, 1729
MmeI TCCRAC 2 cut(s) 489, 2245
Mox20I TGGCCA 3 cut(s) 1374, 1785, 2530
Mph1103I ATGCAT 2 cut(s) 505, 1681
MroNI GCCGGC 1 cut(s) 1203
MroXI GAANNNNTTC 2 cut(s) 1613, 2913
MscI TGGCCA 3 cut(s) 1374, 1785, 2530
MslI CAYNNNNRTG 3 cut(s) 1917, 2345, 2466
Msp20I TGGCCA 3 cut(s) 1374, 1785, 2530
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 4 cut(s) 167, 212, 545, 1204
MspR9I CCNGG 3 cut(s) 197, 1110, 1209
MunI CAATTG 1 cut(s) 2472
Mva1269I GAATGC 3 cut(s) 981, 993, 1746
MvaI CCWGG 3 cut(s) 197, 1110, 1209
MvnI CGCG 1 cut(s) 255
NaeI GCCGGC 1 cut(s) 1205
NcoI CCATGG 1 cut(s) 1375
NdeI CATATG 1 cut(s) 2933
NdeII GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
NgoMIV GCCGGC 1 cut(s) 1203
NlaIII CATG 9 cut(s) 770, 1136, 1288, 1379, 1679, 2105, 2597, 2711, 2789
NlaIV GGNNCC 3 cut(s) 157, 1202, 1701
NmeAIII GCCGAG 2 cut(s) 132, 717
NmuCI GTSAC 3 cut(s) 533, 1970, 2332
NsiI ATGCAT 2 cut(s) 505, 1681
NspI RCATGY 2 cut(s) 1679, 2789
PaqCI CACCTGC 2 cut(s) 837, 1047
PasI CCCWGGG 1 cut(s) 1109
PciSI GCTCTTC 2 cut(s) 651, 2919
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 3 cut(s) 981, 993, 1746
PdiI GCCGGC 1 cut(s) 1205
PdmI GAANNNNTTC 2 cut(s) 1613, 2913
PfeI GAWTC 3 cut(s) 147, 332, 613
PkrI GCNGC 2 cut(s) 128, 2706
PleI GAGTC 5 cut(s) 251, 420, 432, 702, 1729
PpsI GAGTC 5 cut(s) 251, 420, 432, 702, 1729
Ppu21I YACGTR 1 cut(s) 2127
PshAI GACNNNNGTC 1 cut(s) 2385
PshBI ATTAAT 1 cut(s) 2895
PsiI TTATAA 2 cut(s) 1170, 2286
Psp124BI GAGCTC 3 cut(s) 663, 2397, 2414
Psp6I CCWGG 3 cut(s) 195, 1108, 1207
PspFI CCCAGC 1 cut(s) 2836
PspGI CCWGG 3 cut(s) 195, 1108, 1207
PspN4I GGNNCC 3 cut(s) 157, 1202, 1701
PstI CTGCAG 1 cut(s) 2814
PsuI RGATCY 1 cut(s) 2170
RsaI GTAC 5 cut(s) 543, 686, 1447, 2129, 2860
RsaNI GTAC 5 cut(s) 542, 685, 1446, 2128, 2859
RseI CAYNNNNRTG 3 cut(s) 1917, 2345, 2466
SacI GAGCTC 3 cut(s) 663, 2397, 2414
SapI GCTCTTC 2 cut(s) 651, 2919
SatI GCNGC 2 cut(s) 127, 2705
Sau3AI GATC 7 cut(s) 190, 1083, 1145, 1776, 1885, 2170, 2769
SchI GAGTC 5 cut(s) 251, 421, 433, 703, 1729
ScrFI CCNGG 3 cut(s) 197, 1110, 1209
SduI GDGCHC 6 cut(s) 663, 894, 1645, 2397, 2414, 2428
SfaNI GCATC 4 cut(s) 1299, 1696, 1972, 2017
SfcI CTRYAG 2 cut(s) 1012, 2810
SmiMI CAYNNNNRTG 3 cut(s) 1917, 2345, 2466
SmlI CTYRAG 3 cut(s) 671, 1737, 2390
SmoI CTYRAG 3 cut(s) 671, 1737, 2390
SnaBI TACGTA 1 cut(s) 2127
SpeI ACTAGT 1 cut(s) 1442
SsiI CCGC 3 cut(s) 127, 164, 231
SspMI CTAG 3 cut(s) 1104, 1280, 1443
SstI GAGCTC 3 cut(s) 663, 2397, 2414
StyD4I CCNGG 3 cut(s) 195, 1108, 1207
StyI CCWWGG 4 cut(s) 1375, 1485, 2359, 2415
TaaI ACNGT 2 cut(s) 901, 2552
TaiI ACGT 2 cut(s) 1653, 2129
TaqI TCGA 7 cut(s) 177, 189, 1779, 2064, 2247, 2379, 2772
TaqII GACCGA 1 cut(s) 812
TatI WGTACW 2 cut(s) 1445, 2858
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 147, 332, 613
TscAI CASTG 2 cut(s) 2347, 2814
TseFI GTSAC 3 cut(s) 533, 1970, 2332
TseI GCWGC 1 cut(s) 2704
Tsp45I GTSAC 3 cut(s) 533, 1970, 2332
TspGWI ACGGA 1 cut(s) 1103
TspRI CASTG 2 cut(s) 2347, 2814
Vha464I CTTAAG 1 cut(s) 671
VneI GTGCAC 1 cut(s) 1641
VspI ATTAAT 1 cut(s) 2895
XagI CCTNNNNNAGG 1 cut(s) 2258
XapI RAATTY 3 cut(s) 1068, 1382, 2579
XceI RCATGY 2 cut(s) 1679, 2789
XcmI CCANNNNNNNNNTGG 1 cut(s) 1793
XmiI GTMKAC 5 cut(s) 463, 806, 1548, 2123, 2759
XmnI GAANNNNTTC 2 cut(s) 1613, 2913
XspI CTAG 3 cut(s) 1104, 1280, 1443
Zsp2I ATGCAT 2 cut(s) 505, 1681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.