RLG00000008969

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007465
Physical Location & Seq
Reverse (-)
44037868 .. 44044509
6642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008969

Sequence Viewer

Length: 1242 bp
ATGATTGCAGCCACTTCTCCTGTCAACTCCGCATCCCCGATCCCCGCCCCGAACCCGACCCGAACCCGCCGCCCGCGCCAGCTCCGCCTAGGGTTTCCTTCCTTGTCCGAGCCAAGGCTCTGTGCGACGCGGCCCAGGATGGACTTCCTGCACAGAATCGTTGGCGGAGGCTGCTTCCGGGGATCCACGCGACAGGGGCTGAAGGTCGAGATTGATAGCGGCGGCGAGGATATCTTCGATGACGACGCCGCCGCCGCCGCCAACAACGCCCTTCCCGAACATCTCGTCGTCATGGTCAATGGAATTATCGGCAGTGCTTCAGATTGGAGATATGCTGCAGATCAGTTTGTGAAAAAGCTTCCTGATAAAGTAATTGTGCACCGCAGTGAATGTAACTCTTCTAGATTGACATTTGATGGAGTTGACTTGATGGGTGAGAGGCTGGCTGAGGAGGTATTAGCTGTTGTCAGAAAAAGGTCAAAGGTGCGGAAAATTTCCTTTGTCGCTCACTCTTTGGGGGGGTTGGTTGCAAGGTATGCTATCGGGAGGCTGTACGAACCTTTTCCAAAACCCAAACCCTCAGGTGATAATGGTAATTGCTTAATTGAAGGGAATACAAATAATTTGACACAATCCCTTGACCAGCCTCACCAAGGTACGATTGCTGGATTACAAGCTATGAATTTTATAACGGTTGCAACACCACATCTTGGCTCAAGGGGAAATAAACAGCTCCCATTTCTCTGTGGTCTTCCCTTTCTTGAAAGAAGAGCTTCTCAAGCTGCCCACTTTATTGTGGGGAGATCCGGGAAGCATCTCTTCCTAACAGATAAAGATGATGGCAAACCTCCACTTCTTCTTCGAATGGTTAATGACTCTGATGACCTGAAATTTGTGTCAGCATTACGTGCATTTAAGCGTCGTGTGGCATATGCTAATGCAAATTTTGATCATATGGTTGGGTGGAGAACATCATCGATTCGACGTCAACATGAACTTCCGAAGTCCAATCTACTTGTAACAGATGAGAAATATCCACATATTGTACATGTGAGGCAAGAAACTTTTGATGATATTCATAATAATGCATCTTCAGCTGCTGAAAACCAAAATATCGACTTGGAAGAGGAGATGATCAGAGGTCTCACTCAAATACCATGGGAACGTGTAGATGTCAGCTTTCAAAAGAGCCGACAAAGATACATTGCTCATAATACCATTCAGGTCAAAAGGAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

414

Amino Acids

46.11

Weight (kDa)

9.65

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 92 - 324 1.4e-68 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AatII GACGTC 1 cut(s) 988
AccB7I CCANNNNNTGG 1 cut(s) 710
AccII CGCG 3 cut(s) 76, 130, 190
AclWI GGATC 4 cut(s) 34, 177, 190, 798
AcsI RAATTY 4 cut(s) 492, 682, 890, 943
AcuI CTGAAG 3 cut(s) 221, 303, 1077
AcyI GRCGYC 2 cut(s) 246, 985
AfaI GTAC 3 cut(s) 554, 658, 1047
AfiI CCNNNNNNNGG 3 cut(s) 114, 653, 710
AflIII ACRYGT 2 cut(s) 1048, 1165
AgsI TTSAA 3 cut(s) 608, 764, 1184
AjnI CCWGG 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 9 cut(s) 82, 358, 461, 677, 733, 773, 782, 1097, 1179
AluI AGCT 9 cut(s) 82, 358, 461, 677, 733, 773, 782, 1097, 1179
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 1148
Alw44I GTGCAC 1 cut(s) 377
AlwI GGATC 4 cut(s) 34, 177, 190, 798
AlwNI CAGNNNCTG 2 cut(s) 199, 1100
AoxI GGCC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 5 cut(s) 8, 171, 335, 782, 1097
ApoI RAATTY 4 cut(s) 492, 682, 890, 943
ArsI GACNNNNNNTTYG 4 cut(s) 270, 302, 875, 907
Asp700I GAANNNNTTC 2 cut(s) 561, 772
AspA2I CCTAGG 1 cut(s) 88
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 179, 808
AsuHPI GGTGA 3 cut(s) 446, 596, 641
AsuII TTCGAA 1 cut(s) 862
AvrII CCTAGG 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 5 cut(s) 20, 158, 322, 769, 1084
BccI CCATC 4 cut(s) 133, 410, 424, 833
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 2 cut(s) 949, 1134
BcnI CCSGG 2 cut(s) 179, 808
BcoDI GTCTC 1 cut(s) 1148
BfaI CTAG 2 cut(s) 89, 402
BfmI CTRYAG 1 cut(s) 336
BlnI CCTAGG 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 136, 179, 808
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 3 cut(s) 136, 179, 808
BmsI GCATC 3 cut(s) 41, 823, 1097
BpiI GAAGAC 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 862
BpuEI CTTGAG 2 cut(s) 700, 762
BpuMI CCSGG 2 cut(s) 179, 808
Bsa29I ATCGAT 1 cut(s) 977
BsaAI YACGTR 1 cut(s) 908
BsaHI GRCGYC 2 cut(s) 246, 985
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 6 cut(s) 88, 113, 134, 178, 652, 1157
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 653, 710
Bse21I CCTNAGG 1 cut(s) 580
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 977
BseDI CCNNGG 6 cut(s) 88, 113, 134, 178, 652, 1157
BseGI GGATG 2 cut(s) 32, 144
BseLI CCNNNNNNNGG 3 cut(s) 114, 653, 710
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 2 cut(s) 438, 594
BseRI GAGGAG 2 cut(s) 464, 1142
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 5 cut(s) 20, 158, 322, 769, 1084
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 3 cut(s) 76, 130, 190
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 977
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 178, 807
BslI CCNNNNNNNGG 3 cut(s) 114, 653, 710
BsmAI GTCTC 1 cut(s) 1148
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 1148
Bsp119I TTCGAA 1 cut(s) 862
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
Bsp19I CCATGG 1 cut(s) 1157
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 439, 593
BspDI ATCGAT 1 cut(s) 977
BspFNI CGCG 3 cut(s) 76, 130, 190
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 4 cut(s) 34, 177, 190, 798
BspQI GCTCTTC 1 cut(s) 763
BspT104I TTCGAA 1 cut(s) 862
BspTNI GGTCTC 1 cut(s) 1148
BsrDI GCAATG 1 cut(s) 1203
BsrGI TGTACA 1 cut(s) 1045
BssECI CCNNGG 6 cut(s) 88, 113, 134, 178, 652, 1157
BssMI GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
BssNI GRCGYC 2 cut(s) 246, 985
BssT1I CCWWGG 4 cut(s) 88, 113, 652, 1157
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 4 cut(s) 403, 763, 824, 1119
BstACI GRCGYC 2 cut(s) 246, 985
BstAPI GCANNNNNTGC 2 cut(s) 536, 908
BstAUI TGTACA 1 cut(s) 1045
BstBAI YACGTR 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 862
BstC8I GCNNGC 3 cut(s) 74, 80, 444
BstDEI CTNAG 2 cut(s) 447, 580
BstDSI CCRYGG 1 cut(s) 1157
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 32, 144
BstFNI CGCG 3 cut(s) 76, 130, 190
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 6 cut(s) 42, 185, 343, 806, 952, 1137
BstMAI GTCTC 1 cut(s) 1148
BstMBI GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 3 cut(s) 134, 177, 806
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 3 cut(s) 76, 130, 190
BstV1I GCAGC 5 cut(s) 20, 158, 322, 769, 1084
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 2 cut(s) 182, 803
BstYI RGATCY 2 cut(s) 182, 803
Bsu15I ATCGAT 1 cut(s) 977
Bsu36I CCTNAGG 1 cut(s) 580
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 977
BtgI CCRYGG 1 cut(s) 1157
BtsCI GGATG 2 cut(s) 32, 144
BtsI GCAGTG 2 cut(s) 319, 391
BtsIMutI CAGTG 2 cut(s) 319, 391
Cac8I GCNNGC 3 cut(s) 74, 80, 444
CaiI CAGNNNCTG 2 cut(s) 199, 1100
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 132
ClaI ATCGAT 1 cut(s) 977
CseI GACGC 3 cut(s) 136, 254, 908
Csp6I GTAC 3 cut(s) 553, 657, 1046
CviAII CATG 4 cut(s) 292, 992, 1049, 1158
CviQI GTAC 3 cut(s) 553, 657, 1046
DdeI CTNAG 2 cut(s) 447, 580
DpnI GATC 6 cut(s) 41, 184, 342, 805, 951, 1136
DpnII GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
Eam1104I CTCTTC 4 cut(s) 403, 763, 824, 1119
EarI CTCTTC 4 cut(s) 403, 763, 824, 1119
EciI GGCGGA 2 cut(s) 74, 180
Eco130I CCWWGG 4 cut(s) 88, 113, 652, 1157
Eco31I GGTCTC 1 cut(s) 1148
Eco32I GATATC 1 cut(s) 232
Eco57I CTGAAG 3 cut(s) 221, 303, 1077
Eco81I CCTNAGG 1 cut(s) 580
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 4 cut(s) 88, 113, 652, 1157
EcoT22I ATGCAT 1 cut(s) 1090
ErhI CCWWGG 4 cut(s) 88, 113, 652, 1157
FaeI CATG 4 cut(s) 295, 995, 1052, 1161
FalI AAGNNNNNCTT 4 cut(s) 757, 789, 803, 835
FatI CATG 4 cut(s) 291, 991, 1048, 1157
FauI CCCGC 3 cut(s) 52, 74, 81
FauNDI CATATG 2 cut(s) 931, 954
FbaI TGATCA 2 cut(s) 949, 1134
FokI GGATG 2 cut(s) 19, 151
FspBI CTAG 2 cut(s) 89, 402
GlaI GCGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 178, 807
HgaI GACGC 3 cut(s) 136, 254, 908
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 2 cut(s) 246, 985
Hin1II CATG 4 cut(s) 295, 995, 1052, 1161
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 3 cut(s) 25, 424, 989
HindII GTYRAC 3 cut(s) 25, 424, 989
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 3 cut(s) 156, 875, 979
HpaII CCGG 2 cut(s) 178, 807
HphI GGTGA 3 cut(s) 446, 596, 641
Hpy166II GTNNAC 4 cut(s) 25, 379, 424, 989
Hpy188I TCNGA 6 cut(s) 109, 322, 470, 880, 1002, 1139
Hpy188III TCNNGA 6 cut(s) 208, 275, 362, 402, 544, 761
Hpy8I GTNNAC 4 cut(s) 25, 379, 424, 989
Hpy99I CGWCG 5 cut(s) 130, 248, 290, 924, 987
HpyAV CCTTC 4 cut(s) 108, 196, 281, 602
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 3 cut(s) 907, 985, 1165
HpyCH4V TGCA 9 cut(s) 8, 151, 338, 379, 530, 698, 911, 941, 1088
HpyF3I CTNAG 2 cut(s) 447, 580
HpySE526I ACGT 3 cut(s) 907, 985, 1165
Hsp92I GRCGYC 2 cut(s) 246, 985
Hsp92II CATG 4 cut(s) 295, 995, 1052, 1161
HspAI GCGC 1 cut(s) 76
Ksp22I TGATCA 2 cut(s) 949, 1134
Kzo9I GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 2 cut(s) 87, 738
Lsp1109I GCAGC 5 cut(s) 20, 158, 322, 769, 1084
LweI GCATC 3 cut(s) 41, 823, 1097
MaeI CTAG 2 cut(s) 89, 402
MaeII ACGT 3 cut(s) 907, 985, 1165
MaeIII GTNAC 2 cut(s) 392, 1018
MalI GATC 6 cut(s) 41, 184, 342, 805, 951, 1136
MboI GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
MboII GAAGA 9 cut(s) 226, 390, 743, 780, 811, 848, 851, 1083, 1136
MflI RGATCY 2 cut(s) 182, 803
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 9 cut(s) 303, 372, 492, 595, 603, 622, 682, 890, 943
MlyI GAGTC 1 cut(s) 869
Mph1103I ATGCAT 1 cut(s) 1090
MroXI GAANNNNTTC 2 cut(s) 561, 772
MseI TTAA 3 cut(s) 602, 870, 915
MslI CAYNNNNRTG 2 cut(s) 384, 1083
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 2 cut(s) 178, 807
MspR9I CCNGG 3 cut(s) 136, 179, 808
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 3 cut(s) 76, 130, 190
NciI CCSGG 2 cut(s) 179, 808
NcoI CCATGG 1 cut(s) 1157
NdeI CATATG 2 cut(s) 931, 954
NdeII GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
NlaIII CATG 4 cut(s) 295, 995, 1052, 1161
NlaIV GGNNCC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 1090
NspI RCATGY 1 cut(s) 1052
NspV TTCGAA 1 cut(s) 862
OliI CACNNNNGTG 1 cut(s) 384
PciI ACATGT 1 cut(s) 1048
PciSI GCTCTTC 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 2 cut(s) 561, 772
PfeI GAWTC 2 cut(s) 156, 979
PflMI CCANNNNNTGG 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 806
PleI GAGTC 1 cut(s) 869
PpsI GAGTC 1 cut(s) 869
Ppu21I YACGTR 1 cut(s) 908
PscI ACATGT 1 cut(s) 1048
PsiI TTATAA 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 2 cut(s) 199, 1100
PsuI RGATCY 2 cut(s) 182, 803
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 3 cut(s) 554, 658, 1047
RsaNI GTAC 3 cut(s) 553, 657, 1046
RseI CAYNNNNRTG 2 cut(s) 384, 1083
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 3 cut(s) 602, 870, 915
Sau3AI GATC 6 cut(s) 39, 182, 340, 803, 949, 1134
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 869
ScrFI CCNGG 3 cut(s) 136, 179, 808
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 3 cut(s) 41, 823, 1097
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 862
SmiMI CAYNNNNRTG 2 cut(s) 384, 1083
SmlI CTYRAG 2 cut(s) 715, 777
SmoI CTYRAG 2 cut(s) 715, 777
Sse9I AATT 9 cut(s) 303, 372, 492, 595, 603, 622, 682, 890, 943
SspMI CTAG 2 cut(s) 89, 402
StyD4I CCNGG 3 cut(s) 134, 177, 806
StyI CCWWGG 4 cut(s) 88, 113, 652, 1157
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 3 cut(s) 910, 988, 1168
TaqI TCGA 6 cut(s) 207, 237, 862, 977, 982, 1116
TasI AATT 9 cut(s) 303, 372, 492, 595, 603, 622, 682, 890, 943
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 8 cut(s) 72, 133, 222, 225, 251, 254, 257, 260
TfiI GAWTC 2 cut(s) 156, 979
Tru1I TTAA 3 cut(s) 602, 870, 915
Tru9I TTAA 3 cut(s) 602, 870, 915
TscAI CASTG 2 cut(s) 319, 391
TseI GCWGC 5 cut(s) 8, 171, 335, 782, 1097
TspDTI ATGAA 3 cut(s) 695, 1008, 1067
TspRI CASTG 2 cut(s) 319, 391
Van91I CCANNNNNTGG 1 cut(s) 710
VneI GTGCAC 1 cut(s) 377
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 4 cut(s) 492, 682, 890, 943
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 1 cut(s) 1052
XmaJI CCTAGG 1 cut(s) 88
XmnI GAANNNNTTC 2 cut(s) 561, 772
XspI CTAG 2 cut(s) 89, 402
ZraI GACGTC 1 cut(s) 986
Zsp2I ATGCAT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.